PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
78151-78200 / 86044 show all
hfeng-pmm3INDELI6_15HG002compoundhethomalt
24.8000
100.0000
14.1553
62.6280
31031188187
99.4681
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
32.4738
29.1984
36.5769
50.5553
40259760402269746937
99.4695
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
97.9356
99.8106
96.1297
54.5329
474494744191190
99.4764
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
60.2556
85.1120
46.6359
49.9659
71461250718182178174
99.4767
hfeng-pmm3INDELI6_15*homalt
98.2839
99.5993
97.0028
48.9358
6214256214192191
99.4792
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
45.8081
34.5074
68.1144
30.9514
12052287454821292118
99.4833
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
54.4494
95.7490
38.0411
54.7898
4257189428069716935
99.4836
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.0712
99.8632
96.3424
50.4716
511075110194193
99.4845
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.2332
99.8240
96.6922
56.9130
5671105671194193
99.4845
gduggal-bwafbINDELD6_15HG002compoundhethomalt
7.0180
95.8333
3.6424
68.7371
23122582579
99.4845
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
98.5338
99.7378
97.3585
36.6570
7228197224196195
99.4898
jlack-gatkINDELD6_15HG002compoundhethomalt
19.5122
100.0000
10.8108
46.5060
24024198197
99.4949
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
62.4468
81.4917
50.6173
72.8005
29567205200199
99.5000
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
53.5870
96.7318
37.0581
53.6813
3167107318754135386
99.5012
jpowers-varprowlINDELD16_PLUSHG002compoundhet*
17.0370
14.9082
19.8751
36.5405
349199235014111404
99.5039
jpowers-varprowlINDELI1_5HG002compoundhethet
20.5402
73.6471
11.9344
70.4320
62622469150995074
99.5097
mlin-fermikitINDELI6_15HG002compoundhethomalt
11.9676
93.5484
6.3927
50.6201
29228410408
99.5122
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
87.1624
85.4630
88.9307
63.9481
16522811655206205
99.5146
jlack-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.4496
99.8356
99.0666
73.6565
218633621863206205
99.5146
hfeng-pmm1INDELI6_15HG002compoundhethomalt
23.0483
100.0000
13.0252
62.1019
31031207206
99.5169
mlin-fermikitINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
78.7662
69.4733
90.9290
52.5276
20719102075207206
99.5169
ckim-dragenINDELI6_15*homalt
96.6294
99.7115
93.7321
54.6498
6221186221416414
99.5192
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.6936
99.8565
97.5576
63.3125
8348128348209208
99.5215
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.6936
99.8565
97.5576
63.3125
8348128348209208
99.5215
bgallagher-sentieonINDELI1_5HG002compoundhet*
95.0768
93.6792
96.5167
65.8897
1157578111582418416
99.5215
hfeng-pmm1INDELI6_15*homalt
98.1442
99.5993
96.7310
48.9389
6214256214210209
99.5238
jpowers-varprowlINDELI16_PLUSHG002compoundhet*
1.3665
1.0266
2.0427
54.2286
2221212210551050
99.5261
bgallagher-sentieonINDELI6_15HG002compoundhet*
93.1478
91.3856
94.9793
37.0668
80207568021424422
99.5283
bgallagher-sentieonINDELD1_5HG002compoundhethomalt
72.9560
99.6564
57.5397
87.1560
2901290214213
99.5327
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
77.1881
96.8041
64.1824
31.3791
100263311624290649022
99.5366
ghariani-varprowlINDELI6_15HG002compoundhethet
7.4887
61.5385
3.9869
41.9228
1288017141184099
99.5386
eyeh-varpipeINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
62.4607
73.6600
54.2174
39.2369
481172231419541945
99.5394
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_triTR_11to50het
67.8919
98.5775
51.7751
39.8577
69310700652649
99.5399
gduggal-bwafbINDELI16_PLUS**
66.2146
51.1369
93.9014
38.2990
326131163372219218
99.5434
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
55.8462
84.1067
41.8008
48.8238
105311990105941475014683
99.5458
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
53.6407
81.6652
39.9361
49.3327
119372680120081806017978
99.5460
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
50.2630
46.4740
54.7247
37.4043
804926805666663
99.5495
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
69.4365
97.1073
54.0383
40.3757
81242421174999939948
99.5497
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
92.4596
98.1094
87.4251
55.1844
9341180933713431337
99.5532
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
49.3231
87.8558
34.2857
65.7723
46364468897893
99.5541
jpowers-varprowlINDELI16_PLUS**
56.3839
48.9258
66.5246
59.4066
31203257312215711564
99.5544
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
57.1959
83.7351
43.4309
41.9942
61831201621880998063
99.5555
eyeh-varpipeINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
53.8085
55.7377
52.0085
38.7306
6854246227226
99.5595
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
45.9328
83.4475
31.6874
62.3505
73114573815911584
99.5600
jmaeng-gatkINDELI1_5HG002compoundhethomalt
73.9819
99.3921
58.9189
89.0727
3272327228227
99.5614
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
57.0872
46.0813
75.0000
33.7450
127014861368456454
99.5614
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_diTR_51to200*
17.1400
15.6592
18.9300
50.8097
329177232213791373
99.5649
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
37.1023
33.8847
40.9951
49.8226
46719114463966776648
99.5657
ckim-dragenINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.3951
99.8402
98.9540
76.8921
218643521853231230
99.5671
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
97.1997
99.7848
94.7452
59.6307
8348188348463461
99.5680