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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
78001-78050 / 86044 show all
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_diTR_51to200het
53.2627
83.1081
39.1892
51.8438
1232587135134
99.2593
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.5576
99.9158
97.2359
49.7376
474944749135134
99.2593
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
85.4055
83.0652
87.8815
45.0961
981200979135134
99.2593
eyeh-varpipeINDELI6_15*homalt
77.6886
84.0359
72.2329
34.4939
5243996527320272012
99.2600
jpowers-varprowlINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
33.4346
30.2162
37.4205
71.0821
643148564710821074
99.2606
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.6346
96.2423
97.0302
52.9948
1326751813265406403
99.2611
bgallagher-sentieonINDELD6_15HG002compoundhet*
94.8572
94.2753
95.4464
36.1821
85145178510406403
99.2611
eyeh-varpipeINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
89.1434
91.8292
86.6102
71.1229
32482892016231173094
99.2621
jmaeng-gatkINDELD6_15HG002compoundhethomalt
26.0870
100.0000
15.0000
70.0375
24024136135
99.2647
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
61.3722
45.0807
96.1020
31.7355
326739803353136135
99.2647
mlin-fermikitINDELI6_15**
85.1815
80.6671
90.2311
47.3715
2002447992010821772161
99.2650
egarrison-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_51to200het
55.0999
88.5135
40.0000
49.5006
13117182273271
99.2674
gduggal-bwafbINDELI16_PLUSHG002compoundhet*
58.0785
43.2571
88.3503
33.1438
92712161039137136
99.2701
mlin-fermikitINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50*
82.5923
77.5927
88.2806
60.8637
10252961032137136
99.2701
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
85.3437
83.1499
87.6565
44.9532
982199980138137
99.2754
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
82.4326
94.7547
72.9465
54.9486
1120621119415412
99.2771
eyeh-varpipeINDELI6_15HG002complexvarhomalt
78.9714
80.2306
77.7510
38.7303
974240968277275
99.2780
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.1097
99.8684
98.3624
63.9223
8349118349139138
99.2806
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.1097
99.8684
98.3624
63.9223
8349118349139138
99.2806
jlack-gatkINDELI1_5HG002compoundhethomalt
60.9506
99.3921
43.9516
87.9475
3272327417414
99.2806
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
88.9231
98.9002
80.7746
59.1871
1169131168278276
99.2806
ckim-vqsrINDELI6_15*homalt
97.7408
99.8557
95.7136
54.8957
623096230279277
99.2832
ckim-dragenINDELD6_15HG002compoundhet*
94.6830
94.0760
95.2979
36.3455
84965358492419416
99.2840
ckim-gatkINDELI6_15*homalt
97.7332
99.8557
95.6989
54.8919
623096230280278
99.2857
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
82.3222
88.6547
76.8340
52.5393
14301831393420417
99.2857
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.5527
99.8046
97.3318
50.7832
5107105107140139
99.2857
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.6771
99.7888
97.5899
57.2270
5669125669140139
99.2857
astatham-gatkINDELI6_15*homalt
97.7332
99.8557
95.6989
54.9107
623096230280278
99.2857
bgallagher-sentieonINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
98.9950
99.9034
98.1030
36.7067
724077240140139
99.2857
jpowers-varprowlINDELI6_15HG002compoundhet*
2.5440
1.9257
3.7472
39.3654
169860716943414310
99.2859
eyeh-varpipeINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50homalt
48.6766
60.9756
40.5063
39.2308
251696141140
99.2908
ghariani-varprowlINDELI16_PLUSHG002compoundhethet
4.7472
34.0426
2.5515
55.6957
163126993986
99.2951
eyeh-varpipeINDELD16_PLUSHG002complexvarhet
67.4853
60.0723
76.9854
48.1513
665442475142141
99.2958
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
59.1835
45.3355
85.2120
34.7503
277334824143142
99.3007
mlin-fermikitINDELD16_PLUSHG002compoundhethomalt
7.6994
87.5000
4.0268
56.6860
716143142
99.3007
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
81.7362
74.1234
91.0918
40.7803
439715354397430427
99.3023
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
63.5773
97.5422
47.1569
24.3464
190548192421562141
99.3043
ckim-dragenINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
97.8109
99.7103
95.9825
45.9159
103273010321432429
99.3056
dgrover-gatkINDELD1_5HG002compoundhethomalt
80.0000
99.6564
66.8203
87.9210
2901290144143
99.3056
ghariani-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
48.4627
89.8402
33.1807
64.3673
7878979716051594
99.3146
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
93.6324
98.9002
88.8973
60.3677
1169131169146145
99.3151
jpowers-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50het
56.9927
87.3563
42.2925
67.1172
53277535730725
99.3151
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
71.5778
68.2094
75.2961
64.2035
899419890292290
99.3151
ghariani-varprowlINDELD6_15HG002compoundhethet
22.6701
91.4720
12.9384
39.2155
7837380854375400
99.3195
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
91.2102
88.3164
94.3001
47.2057
24343222432147146
99.3197
astatham-gatkINDELD1_5HG002compoundhethomalt
79.6703
99.6564
66.3616
87.7109
2901290147146
99.3197
eyeh-varpipeINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
68.1726
72.6852
64.1876
28.7853
15759794443440
99.3228
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
77.1843
73.4104
81.3673
37.5411
1340448551361631183097
99.3265
jmaeng-gatkINDELI6_15HG002compoundhethomalt
17.2702
100.0000
9.4512
62.3853
31031297295
99.3266
gduggal-bwafbINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
92.5413
96.7290
88.7011
66.3212
35191193517448445
99.3304