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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
77951-78000 / 86044 show all
jli-customINDELI1_5HG002compoundhethomalt
83.7803
99.6960
72.2467
88.6301
3281328126125
99.2063
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
76.0659
65.5275
90.6435
34.5437
241612712451253251
99.2095
jpowers-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
66.7282
78.5285
58.0110
55.6155
10462861050760754
99.2105
gduggal-snapfbINDELD6_15*hetalt
74.5835
65.2679
87.0010
49.2731
53352839850127126
99.2126
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
37.9377
35.2193
41.1108
54.0150
39037179390155885544
99.2126
hfeng-pmm2INDELI6_15HG002compoundhet*
95.0368
93.1632
96.9873
36.8937
81766008177254252
99.2126
hfeng-pmm1INDELI1_5HG002compoundhethomalt
83.5249
99.3921
72.0264
83.4186
3272327127126
99.2126
mlin-fermikitINDELI6_15*het
88.6098
92.6243
84.9289
50.1273
9293740931516531640
99.2136
mlin-fermikitINDELD16_PLUSHG002compoundhet*
72.6643
69.4575
76.1816
36.8312
16267151628509505
99.2141
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
63.5703
52.8321
79.7871
32.1688
313427981109228102788
99.2171
cchapple-customINDEL*HG002compoundhethomalt
57.1228
98.5423
40.2182
82.1359
67610516767761
99.2177
eyeh-varpipeINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
36.8670
24.7423
72.2944
43.7956
96292334128127
99.2188
ghariani-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
36.5445
33.8941
39.6445
65.7686
10882122109316641651
99.2188
mlin-fermikitINDELI6_15HG002complexvarhomalt
91.3948
92.8336
90.0000
56.7129
1127871152128127
99.2188
ckim-vqsrINDELD6_15HG002compoundhethomalt
27.2727
100.0000
15.7895
71.2121
24024128127
99.2188
astatham-gatkINDEL*HG002compoundhet*
95.0088
94.7931
95.2256
62.9264
2840015602828214181407
99.2243
jmaeng-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.6721
99.9315
99.4140
76.0962
218841521884129128
99.2248
ckim-gatkINDELD6_15HG002compoundhethomalt
27.1186
100.0000
15.6863
71.0775
24024129128
99.2248
ckim-dragenINDEL*HG002compoundhet*
93.6532
93.4379
93.8696
62.4863
2799419662786818201806
99.2308
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.6674
99.8437
97.5186
50.9181
510985109130129
99.2308
jpowers-varprowlINDELI16_PLUSHG002complexvar*
64.1165
56.5317
74.0519
63.2294
740569742260258
99.2308
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
73.1589
71.4116
74.9939
43.9770
228469146337931126811182
99.2368
jpowers-varprowlINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50het
67.3887
79.3103
58.5827
62.2024
36896372263261
99.2395
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_diTR_11to50het
66.9508
90.0254
53.2915
48.7249
141881572142721250912414
99.2405
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
97.5933
99.7860
95.4949
53.0674
279862798132131
99.2424
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
40.1009
36.3420
44.7271
57.2051
642211249641779307870
99.2434
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
40.1009
36.3420
44.7271
57.2051
642211249641779307870
99.2434
ghariani-varprowlINDEL*lowcmp_SimpleRepeat_diTR_51to200*
19.2653
18.2294
20.4260
59.9344
383171837414571446
99.2450
jpowers-varprowlINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
46.6236
78.3459
33.1864
69.7120
52114452710611053
99.2460
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
39.0121
35.9892
42.5893
55.2279
53219464531671667112
99.2464
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
85.4801
83.0652
88.0396
45.1406
981200979133132
99.2481
eyeh-varpipeINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50*
63.9710
53.3687
79.8301
38.1774
7056162632665660
99.2481
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200het
33.1178
59.0909
23.0058
50.3159
195135199666661
99.2492
ghariani-varprowlINDELI16_PLUSHG002compoundhet*
1.7907
1.3532
2.6460
56.7653
2921142910671059
99.2502
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
53.0600
50.0000
56.5189
40.9091
865865867667662
99.2504
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
42.7044
39.5869
46.3548
67.9809
16102457161518691855
99.2509
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_51to200het
24.0700
40.7407
17.0807
46.4226
558055267265
99.2509
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
19.1784
16.0456
23.8312
52.5433
2111104209668663
99.2515
gduggal-bwafbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
82.5353
76.8626
89.1121
55.4494
31269413282401398
99.2519
mlin-fermikitINDEL*lowcmp_SimpleRepeat_diTR_51to200het
38.5511
68.5714
26.8126
57.5000
336154196535531
99.2523
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
58.2480
73.8182
48.1020
32.1234
609216173618731859
99.2525
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
58.2480
73.8182
48.1020
32.1234
609216173618731859
99.2525
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.6293
99.8437
97.4442
51.1779
510985109134133
99.2537
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.6391
99.8632
97.4447
51.1732
511075110134133
99.2537
mlin-fermikitINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
98.7368
98.6632
98.8105
55.8582
1114515111131134133
99.2537
raldana-dualsentieonINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.6721
99.9543
99.3915
75.2467
218891021889134133
99.2537
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
82.2770
90.3226
75.5474
70.8511
47651414134133
99.2537
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
42.1139
37.4782
48.0583
42.5126
771912877771083338271
99.2560
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
78.1416
74.7118
81.9014
40.1032
304610313041672667
99.2560
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
85.6047
83.4039
87.9249
45.2229
985196983135134
99.2593