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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
77901-77950 / 86044 show all
jpowers-varprowlINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
44.0104
40.4063
48.3203
59.8954
64849563648769386879
99.1496
eyeh-varpipeINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
59.1118
53.1250
66.6194
50.7504
952840940471467
99.1507
ckim-vqsrINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.6856
99.9087
99.4636
76.0319
218792021879118117
99.1525
mlin-fermikitINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
61.1726
50.2392
78.1885
71.6457
420416423118117
99.1525
rpoplin-dv42INDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
81.8346
80.5442
83.1669
54.9775
592143583118117
99.1525
rpoplin-dv42INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
96.0400
99.0531
93.2047
66.1798
3243313237236234
99.1525
ckim-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.6970
99.9315
99.4637
76.0277
218841521884118117
99.1525
jmaeng-gatkINDELD6_15HG002compoundhet*
95.0402
94.1203
95.9783
36.0728
85005318496356353
99.1573
jpowers-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
64.5916
75.6355
56.3620
56.7025
12203931227950942
99.1579
jpowers-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
63.2704
73.8711
55.3303
67.2928
1456515147411901180
99.1597
jpowers-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
63.2704
73.8711
55.3303
67.2928
1456515147411901180
99.1597
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
97.9533
99.6209
96.3407
45.9172
3153123133119118
99.1597
ckim-isaacINDELI6_15HG002compoundhethomalt
15.7021
38.7097
9.8485
69.8630
121913119118
99.1597
eyeh-varpipeINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
50.5670
63.6364
41.9512
31.6667
14886119118
99.1597
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
53.4542
96.4142
36.9777
47.8842
263598265545254487
99.1602
jpowers-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
57.4755
62.1622
53.4460
78.1472
414252411358355
99.1620
jpowers-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
57.4755
62.1622
53.4460
78.1472
414252411358355
99.1620
eyeh-varpipeINDELI16_PLUS*homalt
74.9769
69.1864
81.8251
30.1275
10804811076239237
99.1632
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
80.3090
93.6464
70.2970
75.8518
33923284120119
99.1667
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
57.4031
85.2666
43.2650
71.4286
1551268156120472030
99.1695
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
57.4031
85.2666
43.2650
71.4286
1551268156120472030
99.1695
ckim-dragenINDELD1_5HG002compoundhet*
95.8880
94.8263
96.9738
65.9095
1160263311600362359
99.1713
jlack-gatkINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
89.9543
98.1728
83.0056
50.9979
59111591121120
99.1736
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
80.6871
76.7630
85.0340
31.9444
13284021375242240
99.1736
jpowers-varprowlINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
84.3810
94.8490
75.9939
75.6668
3152417123155899699887
99.1775
mlin-fermikitINDELD16_PLUSHG002compoundhethet
55.6184
84.9383
41.3462
47.6949
34461258366363
99.1803
ghariani-varprowlINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
61.3598
97.0699
44.8576
61.9828
5433164546567186663
99.1813
jlack-gatkINDELI6_15HG002compoundhet*
90.8429
89.0155
92.7469
37.7522
78129647813611606
99.1817
gduggal-bwafbINDELD6_15*homalt
94.1794
97.6288
90.9654
58.3129
61761506172613608
99.1843
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
97.7824
99.8573
95.7920
54.8083
280042800123122
99.1870
bgallagher-sentieonINDELD1_5HG002compoundhethet
95.8083
98.4954
93.2640
79.3041
1702261703123122
99.1870
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
67.7487
63.3008
72.8688
42.9423
70154067697525972576
99.1914
hfeng-pmm3INDELI1_5HG002compoundhethomalt
83.8462
99.3921
72.5055
83.0068
3272327124123
99.1935
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
97.7654
99.8573
95.7592
54.7998
280042800124123
99.1935
jpowers-varprowlINDELD6_15*het
70.9404
91.9945
57.7285
54.4042
106649281068978277764
99.1951
ckim-dragenINDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
73.7279
98.8858
58.7748
45.3888
3554355249247
99.1968
ckim-vqsrINDELI1_5*homalt
99.7099
99.8312
99.5890
55.2277
6032610260332249247
99.1968
bgallagher-sentieonINDELI6_15*homalt
97.0258
99.8718
94.3376
54.5892
623186231374371
99.1979
mlin-fermikitINDELI1_5HG002compoundhethet
38.7440
70.5882
26.6993
68.3093
60025054614991487
99.1995
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.0161
99.9052
96.1971
55.9029
316233162125124
99.2000
eyeh-varpipeINDELI16_PLUSHG002complexvar*
52.3530
38.8846
80.0955
45.7686
509800503125124
99.2000
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.0161
99.9052
96.1971
56.0561
316233162125124
99.2000
gduggal-bwavardINDELD16_PLUSHG002compoundhethet
32.7572
85.1852
20.2773
36.0547
3456035113801369
99.2029
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
58.4037
95.8604
41.9946
60.0631
5604242563477827720
99.2033
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
58.4037
95.8604
41.9946
60.0631
5604242563477827720
99.2033
dgrover-gatkINDEL*HG002compoundhet*
95.1627
94.9733
95.3528
63.3096
2845415062833613811370
99.2035
gduggal-bwavardINDELD16_PLUSHG002compoundhet*
17.4062
15.1645
20.4258
36.2202
355198635513831372
99.2046
eyeh-varpipeINDELI6_15HG002compoundhethet
24.7604
59.6154
15.6250
55.8621
1248470378375
99.2063
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.7153
99.8632
97.5936
51.6484
511075110126125
99.2063
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.8151
99.8240
97.8265
57.8124
5671105671126125
99.2063