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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
77851-77900 / 86044 show all
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
36.9719
33.9924
40.5239
46.0310
32156243321847234680
99.0896
gduggal-bwavardINDELD6_15HG002compoundhethet
22.7477
94.6262
12.9278
37.5915
8104681654965446
99.0902
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
71.6109
63.4771
82.1356
31.7350
4712712023440436
99.0909
gduggal-bwafbINDELI6_15*hetalt
81.7221
72.8336
93.0818
54.0993
622823231480110109
99.0909
jmaeng-gatkINDELD16_PLUSHG002compoundhet*
94.6939
94.1478
95.2463
35.4713
22041372204110109
99.0909
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.1914
99.7899
96.6433
56.0900
9501209501330327
99.0909
dgrover-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.7221
99.9452
99.4999
76.1475
218871221887110109
99.0909
dgrover-gatkINDELD6_15HG002compoundhet*
95.8086
95.3161
96.3062
36.3267
86084238604330327
99.0909
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
74.9014
73.1006
76.7932
54.3353
356131364110109
99.0909
astatham-gatkINDELD1_5HG002compoundhethet
96.0425
98.2639
93.9193
78.7076
1698301699110109
99.0909
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
96.8247
99.2858
94.4828
49.5258
9453689453552547
99.0942
hfeng-pmm2INDELI6_15HG002compoundhethomalt
21.9081
100.0000
12.3016
63.4253
31031221219
99.0950
bgallagher-sentieonINDELD1_5*homalt
99.7512
99.9530
99.5502
62.3527
489032348908221219
99.0950
ckim-dragenINDELD6_15*homalt
97.3161
99.7471
95.0008
59.2976
6310166309332329
99.0964
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
95.5913
99.6283
91.8687
63.3516
3752143751332329
99.0964
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
95.5913
99.6283
91.8687
63.3516
3752143751332329
99.0964
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
72.0736
97.5227
57.1579
53.3629
161441162512181207
99.0969
eyeh-varpipeINDELD6_15HG002compoundhethetalt
46.3719
30.5239
96.4480
28.8641
248856633014111110
99.0991
ckim-gatkINDELD6_15HG002compoundhet*
95.5310
94.8178
96.2551
36.1757
85634688559333330
99.0991
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.1709
99.7794
96.6134
55.6813
9500219500333330
99.0991
jpowers-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
46.2416
43.0804
49.9034
66.9082
7721020775778771
99.1003
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
43.8182
41.5354
46.3666
49.7641
1328818704132781535915221
99.1015
mlin-fermikitINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200het
48.0237
81.0651
34.1176
68.8073
1373258112111
99.1071
mlin-fermikitINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
79.6367
72.0025
89.0817
63.6267
455217704569560555
99.1071
mlin-fermikitINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
79.6367
72.0025
89.0817
63.6267
455217704569560555
99.1071
dgrover-gatkINDELD1_5HG002compoundhethet
96.0763
98.4375
93.8258
79.0071
1701271702112111
99.1071
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
41.5565
39.2117
44.1996
50.5594
1486223040148441874018573
99.1089
astatham-gatkINDELD6_15HG002compoundhet*
95.7191
95.2165
96.2270
36.2319
85994328595337334
99.1098
hfeng-pmm2INDEL*HG002compoundhethomalt
70.6370
99.4169
54.7791
80.4614
6824682563558
99.1119
ghariani-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
51.7650
93.7381
35.7550
67.8055
49433502902894
99.1131
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
84.8154
82.7107
87.0300
49.4577
91661916916613661354
99.1215
mlin-fermikitINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
90.5188
94.0606
87.2340
71.9711
77649779114113
99.1228
mlin-fermikitINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
90.5188
94.0606
87.2340
71.9711
77649779114113
99.1228
astatham-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.7061
99.9315
99.4818
75.9939
218841521884114113
99.1228
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_diTR_51to200het
60.4235
77.7551
49.4100
70.5217
381109335343340
99.1254
astatham-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
85.5072
98.6072
75.4797
48.5181
3545354115114
99.1304
ckim-vqsrINDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
85.5072
98.6072
75.4797
48.5746
3545354115114
99.1304
cchapple-customINDELI1_5*homalt
99.7155
99.8147
99.6166
51.9774
6031611259755230228
99.1304
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
40.8104
37.5245
44.7270
52.3629
55489237550568036744
99.1327
jpowers-varprowlINDELI16_PLUSHG002complexvarhet
71.5885
75.0376
68.4426
63.7803
499166501231229
99.1342
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
81.8009
78.9787
84.8322
50.9671
1167731081167820882070
99.1379
ckim-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
85.4041
98.6072
75.3191
48.5214
3545354116115
99.1379
ckim-vqsrINDEL*HG002compoundhet*
93.9622
92.7503
95.2061
62.6940
2778821722766513931381
99.1385
mlin-fermikitINDELD6_15HG002compoundhethet
44.7280
80.2570
31.0032
43.1484
68716968315201507
99.1447
jpowers-varprowlINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
62.3309
69.4954
56.5056
75.4786
303133304234232
99.1453
dgrover-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
85.1628
98.3287
75.1064
48.2379
3536353117116
99.1453
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
55.2412
96.6262
38.6762
52.9026
4296150428367916733
99.1459
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
97.4911
99.7899
95.2959
55.3475
9501209501469465
99.1471
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
45.9726
41.2090
51.9814
51.1983
916913081915684588386
99.1487
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
67.4226
63.3961
71.9952
36.3292
59963462604423512331
99.1493