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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
77751-77800 / 86044 show all
bgallagher-sentieonINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
97.6232
99.8976
95.4501
41.3150
1951219519392
98.9247
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
99.3003
99.8758
98.7314
36.7417
7238972389392
98.9247
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.8527
99.9044
97.8230
55.8586
835888358186184
98.9247
bgallagher-sentieonINDELD6_15HG002compoundhethet
89.1342
98.1308
81.6487
68.8379
84016832187185
98.9305
raldana-dualsentieonINDELD6_15HG002compoundhethet
78.4773
78.8551
78.1030
69.3467
675181667187185
98.9305
rpoplin-dv42INDELD6_15HG002compoundhethet
80.3742
96.7290
68.7500
68.2119
82828825375371
98.9333
jpowers-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
44.9870
55.6604
37.7483
73.6014
5947579493
98.9362
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.0554
100.0000
96.1851
55.9528
2370023709493
98.9362
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.8291
99.8805
97.7996
55.4001
8356108356188186
98.9362
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
49.2494
39.3734
65.7385
28.0488
465716543283280
98.9399
gduggal-bwafbINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
94.5282
97.7986
91.4694
41.2757
1012922810122944934
98.9407
ghariani-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
40.7441
38.0238
43.8836
68.6231
7351198739945935
98.9418
jmaeng-gatkINDELD6_15HG002compoundhethet
88.9799
98.0140
81.4706
68.2342
83917831189187
98.9418
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_diTR_11to50*
79.8081
77.9624
81.7434
39.7623
285288064487731089310778
98.9443
ckim-vqsrINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
99.2867
99.8758
98.7045
36.9692
7238972389594
98.9474
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
89.8585
83.7475
96.9315
44.2062
11527223730019594
98.9474
ckim-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
99.2867
99.8758
98.7045
36.9692
7238972389594
98.9474
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.2716
99.9044
96.6913
55.0844
835888358286283
98.9510
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
52.6781
47.7624
58.7217
52.4909
17611926176412401227
98.9516
eyeh-varpipeINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
70.1135
58.5834
87.2943
32.4261
335823741978728802850
98.9583
eyeh-varpipeINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50het
79.6904
73.7069
86.7312
40.6237
3421221255192190
98.9583
eyeh-varpipeINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
19.0690
11.4688
56.5315
43.2950
57440251193191
98.9637
jpowers-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
41.1230
32.4837
56.0227
78.9373
4971033493387383
98.9664
jpowers-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
41.1230
32.4837
56.0227
78.9373
4971033493387383
98.9664
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.9267
99.8738
97.9975
50.0103
4747647479796
98.9691
raldana-dualsentieonINDELD16_PLUSHG002compoundhet*
94.0691
92.4818
95.7118
34.3777
216517621659796
98.9691
qzeng-customSNP*map_l125_m2_e0homalt
83.6128
72.2475
99.2214
67.7362
125534822123629796
98.9691
gduggal-bwaplatINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
84.7019
75.5446
96.3855
35.1952
520216845200195193
98.9744
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.7335
99.7729
97.7156
45.5716
8347198341195193
98.9744
ghariani-varprowlINDELI6_15HG002compoundhet*
2.8447
2.1650
4.1467
43.0029
190858619043924347
98.9754
jpowers-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
59.6174
68.6837
52.6656
65.6874
647295652586580
98.9761
ckim-dragenINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.9650
99.8245
98.1202
75.4285
307075430692588582
98.9796
ghariani-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_51to200het
31.8050
60.7407
21.5426
49.5302
825381295292
98.9831
raldana-dualsentieonINDELD1_5HG002compoundhet*
94.6881
92.0801
97.4481
64.3836
1126696911265295292
98.9831
dgrover-gatkINDELD1_5HG002compoundhet*
96.6517
95.7826
97.5368
66.6083
1171951611721296293
98.9865
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
79.2963
71.7737
88.5804
40.3166
989438911072013821368
98.9870
jpowers-varprowlINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
49.6437
72.3762
37.7781
62.4735
29241116293848394790
98.9874
eyeh-varpipeINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
86.9712
95.7121
79.6933
69.9711
294421319492601255212425
98.9882
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
73.8882
99.6873
58.6974
39.9145
510116520036593622
98.9888
gduggal-bwafbINDELI16_PLUSHG002compoundhethomalt
3.8462
66.6667
1.9802
47.1204
2129998
98.9899
gduggal-bwaplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
83.3771
73.0169
97.1633
50.4684
678425076782198196
98.9899
gduggal-bwaplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
83.3771
73.0169
97.1633
50.4684
678425076782198196
98.9899
jmaeng-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
99.2664
99.8896
98.6509
37.0615
7239872399998
98.9899
jlack-gatkINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
92.4826
97.3404
88.0866
60.7649
732207329998
98.9899
astatham-gatkINDELD1_5HG002compoundhet*
96.5582
95.6110
97.5244
66.3015
1169853711700297294
98.9899
gduggal-snapfbINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
55.7305
44.0570
75.8202
34.2652
173121981872597591
98.9950
jpowers-varprowlINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50*
47.5294
38.2286
62.8109
62.6047
505816505299296
98.9967
ckim-gatkINDELD1_5HG002compoundhet*
95.9834
94.5321
97.4800
66.2715
1156666911566299296
98.9967
ckim-vqsrINDELD1_5HG002compoundhet*
95.9661
94.4994
97.4791
66.2791
1156267311562299296
98.9967
mlin-fermikitINDELD6_15HG002compoundhet*
69.7015
65.9174
73.9466
36.0645
59533078594920962075
98.9981