PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
77601-77650 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 83.0581 | 82.1038 | 84.0349 | 57.1491 | 1725 | 376 | 1637 | 311 | 307 | 98.7138 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 93.6669 | 99.5017 | 88.4786 | 52.7565 | 599 | 3 | 599 | 78 | 77 | 98.7179 | |
| jpowers-varprowl | INDEL | I16_PLUS | HG002compoundhet | homalt | 7.1429 | 100.0000 | 3.7037 | 66.6667 | 3 | 0 | 3 | 78 | 77 | 98.7179 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 15.3418 | 13.9640 | 17.0213 | 57.0776 | 31 | 191 | 32 | 156 | 154 | 98.7179 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.3454 | 90.6386 | 94.1176 | 50.5132 | 2498 | 258 | 2496 | 156 | 154 | 98.7179 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 88.8647 | 90.8347 | 86.9783 | 67.1961 | 555 | 56 | 521 | 78 | 77 | 98.7179 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.2310 | 94.8350 | 97.6687 | 49.0598 | 13073 | 712 | 13071 | 312 | 308 | 98.7179 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 96.0419 | 95.4134 | 96.6787 | 32.0948 | 4535 | 218 | 4541 | 156 | 154 | 98.7179 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 88.7128 | 96.9359 | 81.7757 | 44.7028 | 348 | 11 | 350 | 78 | 77 | 98.7179 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 73.6043 | 64.1917 | 86.2515 | 56.0661 | 1366 | 762 | 1468 | 234 | 231 | 98.7179 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 93.6669 | 99.5017 | 88.4786 | 52.4912 | 599 | 3 | 599 | 78 | 77 | 98.7179 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 71.6605 | 91.8919 | 58.7302 | 73.5664 | 136 | 12 | 111 | 78 | 77 | 98.7179 | |
| jmaeng-gatk | INDEL | D1_5 | HG002compoundhet | * | 95.7461 | 94.1888 | 97.3557 | 66.4684 | 11524 | 711 | 11524 | 313 | 309 | 98.7220 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 68.7607 | 88.3768 | 56.2708 | 60.0546 | 12158 | 1599 | 12195 | 9477 | 9356 | 98.7232 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 68.7607 | 88.3768 | 56.2708 | 60.0546 | 12158 | 1599 | 12195 | 9477 | 9356 | 98.7232 | |
| gduggal-bwafb | INDEL | * | HG002compoundhet | hetalt | 88.3144 | 80.5679 | 97.7090 | 73.4740 | 20287 | 4893 | 6696 | 157 | 155 | 98.7261 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 85.8009 | 91.8776 | 80.4781 | 48.4090 | 11504 | 1017 | 11378 | 2760 | 2725 | 98.7319 | |
| jpowers-varprowl | INDEL | I16_PLUS | * | homalt | 77.5728 | 66.5599 | 92.9527 | 53.9441 | 1039 | 522 | 1042 | 79 | 78 | 98.7342 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 93.5937 | 99.5017 | 88.3481 | 52.5210 | 599 | 3 | 599 | 79 | 78 | 98.7342 | |
| hfeng-pmm1 | INDEL | I6_15 | HG002compoundhet | * | 94.9235 | 92.7871 | 97.1606 | 36.4711 | 8143 | 633 | 8144 | 238 | 235 | 98.7395 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.6538 | 97.4644 | 97.8440 | 54.1303 | 10801 | 281 | 10801 | 238 | 235 | 98.7395 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 77.2155 | 68.0091 | 89.3048 | 56.7130 | 2398 | 1128 | 668 | 80 | 79 | 98.7500 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 77.2155 | 68.0091 | 89.3048 | 56.7130 | 2398 | 1128 | 668 | 80 | 79 | 98.7500 | |
| ltrigg-rtg1 | INDEL | * | HG002complexvar | hetalt | 94.3098 | 90.8354 | 98.0606 | 74.9985 | 3360 | 339 | 4045 | 80 | 79 | 98.7500 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 92.3787 | 95.5903 | 89.3758 | 38.2787 | 672 | 31 | 673 | 80 | 79 | 98.7500 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 76.0331 | 67.0590 | 87.7802 | 43.4475 | 11850 | 5821 | 12686 | 1766 | 1744 | 98.7542 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 76.0331 | 67.0590 | 87.7802 | 43.4475 | 11850 | 5821 | 12686 | 1766 | 1744 | 98.7542 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 70.2794 | 91.7657 | 56.9459 | 43.6183 | 1081 | 97 | 3718 | 2811 | 2776 | 98.7549 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 75.9168 | 99.5247 | 61.3615 | 46.7806 | 5654 | 27 | 5868 | 3695 | 3649 | 98.7551 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 67.6237 | 92.1660 | 53.4032 | 48.7367 | 3353 | 285 | 3413 | 2978 | 2941 | 98.7576 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 77.9859 | 92.7577 | 67.2727 | 45.6641 | 333 | 26 | 333 | 162 | 160 | 98.7654 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.7119 | 72.4534 | 86.1538 | 53.4606 | 505 | 192 | 504 | 81 | 80 | 98.7654 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 45.5773 | 40.9756 | 51.3433 | 39.6396 | 84 | 121 | 172 | 163 | 161 | 98.7730 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 45.5773 | 40.9756 | 51.3433 | 39.6396 | 84 | 121 | 172 | 163 | 161 | 98.7730 | |
| eyeh-varpipe | INDEL | I6_15 | * | het | 83.0781 | 80.3150 | 86.0381 | 40.9246 | 8058 | 1975 | 8048 | 1306 | 1290 | 98.7749 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.8288 | 96.4491 | 97.2114 | 54.8569 | 14260 | 525 | 14258 | 409 | 404 | 98.7775 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 60.9341 | 95.6793 | 44.7012 | 53.4443 | 11980 | 541 | 12051 | 14908 | 14726 | 98.7792 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 40.3639 | 25.5814 | 95.6173 | 48.0711 | 902 | 2624 | 1789 | 82 | 81 | 98.7805 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 40.3639 | 25.5814 | 95.6173 | 48.0711 | 902 | 2624 | 1789 | 82 | 81 | 98.7805 | |
| mlin-fermikit | INDEL | * | HG002compoundhet | hetalt | 77.7377 | 63.7887 | 99.4948 | 53.3255 | 16062 | 9118 | 16150 | 82 | 81 | 98.7805 | |
| raldana-dualsentieon | INDEL | I16_PLUS | HG002compoundhet | * | 92.4081 | 89.1741 | 95.8856 | 50.9476 | 1911 | 232 | 1911 | 82 | 81 | 98.7805 | |
| eyeh-varpipe | INDEL | D16_PLUS | * | het | 74.8225 | 76.6382 | 73.0908 | 51.0116 | 2421 | 738 | 2230 | 821 | 811 | 98.7820 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 46.6247 | 43.6219 | 50.0715 | 62.1939 | 7000 | 9047 | 7003 | 6983 | 6898 | 98.7828 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 81.2248 | 74.4026 | 89.4244 | 27.1457 | 7037 | 2421 | 7644 | 904 | 893 | 98.7832 | |
| gduggal-bwafb | INDEL | * | HG002compoundhet | homalt | 33.7522 | 95.9184 | 20.4793 | 75.1027 | 658 | 28 | 658 | 2555 | 2524 | 98.7867 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 61.3754 | 57.2372 | 66.1586 | 39.2942 | 14046 | 10494 | 14021 | 7172 | 7085 | 98.7869 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 81.6412 | 91.8702 | 73.4619 | 47.8010 | 6170 | 546 | 6173 | 2230 | 2203 | 98.7892 | |
| eyeh-varpipe | INDEL | I1_5 | HG002compoundhet | * | 54.5656 | 48.0495 | 63.1261 | 63.8199 | 5937 | 6419 | 5961 | 3482 | 3440 | 98.7938 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 59.0686 | 94.1575 | 43.0321 | 53.7351 | 13763 | 854 | 13840 | 18322 | 18101 | 98.7938 | |
| dgrover-gatk | INDEL | D6_15 | HG002compoundhet | het | 90.2073 | 98.2477 | 83.3834 | 68.6441 | 841 | 15 | 833 | 166 | 164 | 98.7952 | |