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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
77451-77500 / 86044 show all
rpoplin-dv42INDEL*HG002compoundhethetalt
95.8717
92.3153
99.7130
50.6553
232451935232766766
98.5075
jlack-gatkINDELI6_15HG002complexvarhomalt
97.1497
99.6705
94.7533
55.9047
1210412106766
98.5075
asubramanian-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
93.7284
97.0320
90.6425
82.6718
850266496766
98.5075
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.1935
96.8999
97.4889
57.0530
36727117536532941927
98.5122
jlack-gatkINDELD6_15*homalt
98.1988
99.5416
96.8918
51.5867
6297296297202199
98.5149
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
97.0821
99.3893
94.8796
55.1755
3743233743202199
98.5149
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
97.0821
99.3893
94.8796
55.1755
3743233743202199
98.5149
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.7827
99.6639
97.9169
51.5925
9489329495202199
98.5149
rpoplin-dv42INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
94.1229
98.2424
90.3349
66.0632
3801683776404398
98.5149
gduggal-bwavardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
43.1783
40.0414
46.8485
64.6530
7741159773877864
98.5177
astatham-gatkINDELD6_15*homalt
98.8889
99.8893
97.9083
55.4989
631976319135133
98.5185
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.1994
99.9203
96.5367
59.9507
376333763135133
98.5185
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.1994
99.9203
96.5367
59.9507
376333763135133
98.5185
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.7289
99.8064
97.6744
57.4974
5670115670135133
98.5185
rpoplin-dv42INDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
91.6503
90.9598
92.3513
65.0841
16301621630135133
98.5185
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.7377
99.8240
97.6748
57.4932
5671105671135133
98.5185
ghariani-varprowlINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
50.2132
87.3684
35.2307
72.3584
5818458810811065
98.5199
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
62.8376
94.6349
47.0342
60.4447
16863956169451908218800
98.5222
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
83.8170
96.5624
74.0438
56.3581
3736133425914931471
98.5265
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
54.4885
52.9412
56.1290
51.1555
261232261204201
98.5294
ckim-vqsrINDELI16_PLUS*homalt
97.7080
99.6797
95.8128
71.8495
1556515566867
98.5294
dgrover-gatkINDELD6_15*homalt
98.8732
99.8735
97.8928
55.5601
631886318136134
98.5294
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.1733
99.8938
96.5110
60.0492
376243762136134
98.5294
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.1733
99.8938
96.5110
60.0492
376243762136134
98.5294
ckim-gatkINDELI16_PLUS*homalt
97.7080
99.6797
95.8128
71.8495
1556515566867
98.5294
eyeh-varpipeINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50homalt
53.6328
46.6667
63.0435
33.0909
21241166867
98.5294
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
89.6150
96.8720
83.3696
61.8257
3066993068612603
98.5294
mlin-fermikitINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
92.8902
95.7121
90.2299
74.0007
625286286867
98.5294
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.6411
96.9703
98.3214
47.5930
1997262419973341336
98.5337
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
61.2415
62.4812
60.0500
60.0866
831499720479472
98.5386
gduggal-bwafbINDELI1_5*hetalt
90.3216
84.5735
96.9081
78.3569
946817274294137135
98.5401
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
62.6517
96.2893
46.4314
47.0193
7110274714382418121
98.5439
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
49.1300
84.7567
34.5903
59.0099
1846332185335043453
98.5445
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.7839
96.9412
98.6414
47.7167
1996663019967275271
98.5455
ghariani-varprowlINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
35.8287
33.0357
39.1376
73.2950
703142570811011085
98.5468
jpowers-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
57.9234
68.4909
50.1809
63.0076
413190416413407
98.5472
jpowers-varprowlINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
38.7027
35.8682
42.0236
64.3849
36136460360149684896
98.5507
mlin-fermikitINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
67.5878
77.1812
60.1156
69.6491
115341046968
98.5507
rpoplin-dv42INDELI6_15*homalt
97.7056
96.5700
98.8683
48.6914
602521460286968
98.5507
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
96.2570
93.3938
99.3014
31.9625
978369298086968
98.5507
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.7010
96.5880
98.8399
43.3164
1763662317637207204
98.5507
qzeng-customSNP*map_l100_m0_e0homalt
82.4060
70.4991
99.1522
62.7863
8192342880706968
98.5507
ltrigg-rtg2SNP*HG002complexvarhomalt
99.9218
99.8676
99.9761
19.6026
2881923822881186968
98.5507
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
73.5605
66.5605
82.2059
36.1952
6273152236484477
98.5537
ghariani-varprowlINDELI6_15**
61.1674
55.3640
68.3299
52.2203
13743110801376363796287
98.5578
gduggal-bwafbINDEL**hetalt
87.6150
80.5643
96.0183
78.7583
2033249056728279275
98.5663
rpoplin-dv42INDELD6_15HG002compoundhet*
94.2413
93.2455
95.2586
34.8015
84216108418419413
98.5680
mlin-fermikitINDELI1_5lowcmp_SimpleRepeat_diTR_11to50homalt
93.3753
98.5816
88.6914
66.8807
55685497069
98.5714
raldana-dualsentieonINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
98.2138
99.9488
96.5381
40.8253
1952119527069
98.5714
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
77.4166
67.7028
90.3846
37.1872
485723176587069
98.5714