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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
76801-76850 / 86044 show all
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
71.2051
68.6858
73.9162
57.7097
2976513570418411476514397
97.5076
jlack-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
92.9723
97.9176
88.5025
64.8041
2163462163281274
97.5089
gduggal-bwavardINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
74.2424
96.3582
60.3834
43.4396
10028379998565516388
97.5118
ghariani-varprowlINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
72.8517
89.6171
61.3706
74.5275
13811601406885863
97.5141
gduggal-bwavardINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
64.5823
60.5420
69.2004
40.5056
1485796831473965606397
97.5152
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_51to200het
57.8720
92.5676
42.0945
50.6085
13711205282275
97.5177
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
76.1646
71.9865
80.8576
48.0795
1601762331653739153818
97.5223
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.4990
98.1160
98.8851
46.7540
1791534417916202197
97.5248
jpowers-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
50.1083
46.0897
54.8947
70.8664
442517443364355
97.5275
gduggal-bwavardINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
43.5112
89.2820
28.7648
54.7750
85810385021052053
97.5297
ciseli-customINDELI6_15HG002compoundhethomalt
0.8094
32.2581
0.4098
28.2142
10211024302370
97.5309
hfeng-pmm2INDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
99.4122
99.6041
99.2209
44.4011
1031641103168179
97.5309
jlack-gatkINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200het
64.2536
98.2249
47.7419
79.1667
1663748179
97.5309
gduggal-bwavardINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
26.2279
23.2884
30.0166
55.4521
915301490521102058
97.5355
rpoplin-dv42INDEL*HG002compoundhethomalt
86.3667
98.3965
76.9580
80.9842
67511678203198
97.5369
jpowers-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
23.0412
16.2978
39.3035
77.1850
8141679122119
97.5410
ghariani-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
68.6915
87.3964
56.5817
68.5791
52776533409399
97.5550
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_triTR_51to200*
16.3569
13.3333
21.1538
62.5899
1065114140
97.5610
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_triTR_51to200het
33.1825
76.9231
21.1538
59.0551
103114140
97.5610
jli-customINDELD1_5HG002compoundhethetalt
97.3992
95.3113
99.5807
60.0898
973747997374140
97.5610
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.4223
99.8206
99.0272
61.0885
83451583478280
97.5610
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.4223
99.8206
99.0272
61.0885
83451583478280
97.5610
gduggal-bwavardINDELI6_15segdup*
68.6994
65.1429
72.6667
92.8605
114611094140
97.5610
gduggal-bwavardINDELI6_15segduphet
78.4212
97.5904
65.5462
93.4795
812784140
97.5610
gduggal-bwafbINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
79.7506
68.0178
96.3749
45.6511
2601122310904140
97.5610
gduggal-bwafbINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.5570
99.4777
99.6364
55.6678
1123759112344140
97.5610
ckim-dragenINDELD16_PLUSHG002compoundhet*
94.5882
94.4468
94.7301
35.7379
22111302211123120
97.5610
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.9790
97.7713
98.1875
54.9936
3127971331203576562
97.5694
bgallagher-sentieonINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
94.2519
99.0946
89.8604
65.5446
2189202189247241
97.5709
jpowers-varprowlINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
83.7981
89.6100
78.6942
72.7931
5468634549614881452
97.5806
gduggal-bwafbINDELI6_15**
87.8626
81.3399
95.5225
40.4474
20191463221206994970
97.5855
cchapple-customINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.3690
99.6782
99.0618
71.6714
306629930621290283
97.5862
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
84.7537
83.5791
85.9619
55.6947
3621971163606158895747
97.5887
jli-customINDELD6_15HG002compoundhethet
93.6150
96.6121
90.7982
65.4935
827298198381
97.5904
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
86.6457
91.9827
81.8942
39.7431
6792592676214951459
97.5920
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
56.5909
40.1432
95.8723
58.5392
420562706759291284
97.5945
mlin-fermikitINDEL*lowcmp_SimpleRepeat_diTR_11to50*
89.0060
88.0657
89.9667
48.3054
3222543673213735843498
97.6004
ndellapenna-hhgaINDELD1_5HG002compoundhet*
69.2944
67.8709
70.7788
60.8775
83043931838834633380
97.6032
jmaeng-gatkINDELI1_5*homalt
99.7149
99.8444
99.5857
55.4032
603349460340251245
97.6096
jpowers-varprowlINDELI1_5*het
91.4249
95.2000
87.9379
62.1984
752473794752591032310077
97.6170
asubramanian-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
90.2904
97.2376
84.2697
84.6816
352102254241
97.6190
asubramanian-gatkINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200het
75.9608
97.6331
62.1622
84.2553
1654694241
97.6190
mlin-fermikitINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50het
92.3449
94.3042
90.4654
62.2051
1606971594168164
97.6190
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
77.7997
63.9808
99.2322
42.2569
106886017108568482
97.6190
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
77.7997
63.9808
99.2322
42.2569
106886017108568482
97.6190
jli-customINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.8509
96.2242
99.5336
65.6849
894535189644241
97.6190
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
48.1828
41.3707
57.6805
50.9762
132818821318967944
97.6215
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
82.5092
75.5024
90.9494
56.1947
634920606351632617
97.6266
ckim-vqsrINDEL*lowcmp_SimpleRepeat_diTR_51to200*
85.9526
84.9119
87.0190
57.3989
17843171696253247
97.6285
jpowers-varprowlINDEL***
86.4885
85.2886
87.7226
56.7888
293855506872936274109540121
97.6299