PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
76701-76750 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 96.8135 | 98.9459 | 94.7711 | 71.2462 | 5538 | 59 | 5528 | 305 | 297 | 97.3770 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 48.2628 | 55.3309 | 42.7960 | 40.3404 | 602 | 486 | 600 | 802 | 781 | 97.3815 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 91.8325 | 89.0303 | 94.8168 | 50.9778 | 3498 | 431 | 3494 | 191 | 186 | 97.3822 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.7436 | 97.0652 | 98.4317 | 54.5032 | 21597 | 653 | 21590 | 344 | 335 | 97.3837 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 65.2182 | 88.7879 | 51.5371 | 58.1061 | 293 | 37 | 285 | 268 | 261 | 97.3881 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 74.4244 | 62.1108 | 92.8275 | 37.1477 | 3631 | 2215 | 8943 | 691 | 673 | 97.3951 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 74.4244 | 62.1108 | 92.8275 | 37.1477 | 3631 | 2215 | 8943 | 691 | 673 | 97.3951 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 84.5297 | 95.6092 | 75.7515 | 51.0570 | 2613 | 120 | 2999 | 960 | 935 | 97.3958 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 80.5507 | 87.9777 | 74.2800 | 74.5872 | 1105 | 151 | 1109 | 384 | 374 | 97.3958 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 94.3163 | 93.0341 | 95.6344 | 40.1307 | 3793 | 284 | 4206 | 192 | 187 | 97.3958 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 98.0729 | 97.4752 | 98.6779 | 47.9442 | 20076 | 520 | 20077 | 269 | 262 | 97.3978 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 48.4456 | 45.3883 | 51.9444 | 59.2990 | 374 | 450 | 374 | 346 | 337 | 97.3988 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 23.4714 | 18.6688 | 31.6005 | 60.9925 | 230 | 1002 | 231 | 500 | 487 | 97.4000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 94.0231 | 94.1723 | 93.8743 | 38.5973 | 1519 | 94 | 8260 | 539 | 525 | 97.4026 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 56.2300 | 84.6154 | 42.1053 | 63.3609 | 143 | 26 | 56 | 77 | 75 | 97.4026 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.5863 | 99.2023 | 97.9779 | 71.0352 | 3731 | 30 | 3731 | 77 | 75 | 97.4026 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.5863 | 99.2023 | 97.9779 | 71.0352 | 3731 | 30 | 3731 | 77 | 75 | 97.4026 | |
| jlack-gatk | INDEL | I6_15 | HG002complexvar | * | 97.6141 | 96.8698 | 98.3700 | 57.6968 | 4642 | 150 | 4647 | 77 | 75 | 97.4026 | |
| hfeng-pmm1 | INDEL | D6_15 | HG002compoundhet | * | 95.4940 | 92.9354 | 98.1974 | 32.8011 | 8393 | 638 | 8389 | 154 | 150 | 97.4026 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.7289 | 88.8607 | 96.9493 | 47.5369 | 2449 | 307 | 2447 | 77 | 75 | 97.4026 | |
| ckim-vqsr | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.5126 | 99.8992 | 99.1290 | 74.4665 | 30730 | 31 | 30730 | 270 | 263 | 97.4074 | |
| cchapple-custom | INDEL | D16_PLUS | HG002compoundhet | het | 95.2281 | 95.0617 | 95.3950 | 30.7967 | 385 | 20 | 2403 | 116 | 113 | 97.4138 | |
| ckim-gatk | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.5208 | 99.9187 | 99.1260 | 74.4622 | 30736 | 25 | 30736 | 271 | 264 | 97.4170 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 86.6995 | 85.5368 | 87.8943 | 72.5250 | 3099 | 524 | 3093 | 426 | 415 | 97.4178 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 85.2297 | 77.7913 | 94.2409 | 52.4466 | 4459 | 1273 | 4451 | 272 | 265 | 97.4265 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 60.2317 | 54.9296 | 66.6667 | 46.3303 | 78 | 64 | 78 | 39 | 38 | 97.4359 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.0073 | 98.6439 | 99.3734 | 43.8166 | 6183 | 85 | 6185 | 39 | 38 | 97.4359 | |
| raldana-dualsentieon | INDEL | I16_PLUS | * | homalt | 97.4343 | 99.7438 | 95.2294 | 67.8023 | 1557 | 4 | 1557 | 78 | 76 | 97.4359 | |
| rpoplin-dv42 | INDEL | D1_5 | HG002compoundhet | * | 95.7563 | 94.7855 | 96.7473 | 62.2778 | 11597 | 638 | 11600 | 390 | 380 | 97.4359 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.9410 | 92.7025 | 99.4141 | 25.1041 | 6593 | 519 | 6617 | 39 | 38 | 97.4359 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 95.9098 | 92.6401 | 99.4187 | 25.8018 | 6646 | 528 | 6670 | 39 | 38 | 97.4359 | |
| rpoplin-dv42 | SNP | * | map_l125_m2_e0 | homalt | 99.5066 | 99.2403 | 99.7743 | 69.1861 | 17243 | 132 | 17243 | 39 | 38 | 97.4359 | |
| rpoplin-dv42 | SNP | * | map_l125_m2_e1 | homalt | 99.5110 | 99.2471 | 99.7764 | 69.2363 | 17400 | 132 | 17400 | 39 | 38 | 97.4359 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 78.6885 | 100.0000 | 64.8649 | 84.2999 | 169 | 0 | 72 | 39 | 38 | 97.4359 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.6869 | 99.5614 | 95.8817 | 72.8731 | 908 | 4 | 908 | 39 | 38 | 97.4359 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 94.3522 | 99.0237 | 90.1015 | 65.0864 | 710 | 7 | 710 | 78 | 76 | 97.4359 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.7103 | 95.9230 | 99.5655 | 64.4709 | 8917 | 379 | 8936 | 39 | 38 | 97.4359 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.0717 | 94.7636 | 99.4951 | 30.0679 | 7637 | 422 | 7685 | 39 | 38 | 97.4359 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.0717 | 94.7636 | 99.4951 | 30.0679 | 7637 | 422 | 7685 | 39 | 38 | 97.4359 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.6303 | 99.8788 | 95.4809 | 71.6678 | 824 | 1 | 824 | 39 | 38 | 97.4359 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.6303 | 99.8788 | 95.4809 | 71.6678 | 824 | 1 | 824 | 39 | 38 | 97.4359 | |
| bgallagher-sentieon | INDEL | D6_15 | * | hetalt | 96.5632 | 93.7974 | 99.4971 | 32.7057 | 7667 | 507 | 7716 | 39 | 38 | 97.4359 | |
| asubramanian-gatk | INDEL | I6_15 | HG002compoundhet | homalt | 16.5775 | 100.0000 | 9.0379 | 62.9989 | 31 | 0 | 31 | 312 | 304 | 97.4359 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.5419 | 95.5335 | 99.6365 | 30.2678 | 10609 | 496 | 10690 | 39 | 38 | 97.4359 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 83.0948 | 80.0643 | 86.3636 | 58.1871 | 249 | 62 | 247 | 39 | 38 | 97.4359 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 82.9662 | 72.2705 | 97.3775 | 48.0824 | 10141 | 3891 | 10137 | 273 | 266 | 97.4359 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 89.9308 | 89.1078 | 90.7692 | 60.4401 | 769 | 94 | 767 | 78 | 76 | 97.4359 | |
| jli-custom | INDEL | D6_15 | * | homalt | 99.2923 | 99.8103 | 98.7797 | 52.7778 | 6314 | 12 | 6314 | 78 | 76 | 97.4359 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.8687 | 99.7876 | 97.9666 | 56.5178 | 3758 | 8 | 3758 | 78 | 76 | 97.4359 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.8687 | 99.7876 | 97.9666 | 56.5178 | 3758 | 8 | 3758 | 78 | 76 | 97.4359 | |