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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
76451-76500 / 86044 show all
dgrover-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.9811
96.5062
99.5018
33.8856
657423865913332
96.9697
gduggal-snapvardSNPtisegduphomalt
98.6062
97.6815
99.5484
88.2591
733117472753332
96.9697
gduggal-snapfbINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
68.1644
57.9487
82.7526
54.9804
180813124759996
96.9697
gduggal-bwaplatINDEL**hetalt
82.4487
71.6091
97.1551
71.6669
18072716518066529513
96.9754
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
90.9117
92.0249
89.8250
65.4470
59085125853663643
96.9834
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
90.9117
92.0249
89.8250
65.4470
59085125853663643
96.9834
gduggal-snapfbINDELD6_15*het
85.3034
77.5966
94.7099
36.4009
8995259714269797773
96.9887
eyeh-varpipeINDELD6_15**
75.4633
71.7500
79.5820
47.2482
1872173711865847874643
96.9919
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.3971
97.0646
97.7319
53.7356
1435143414349333323
96.9970
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
98.1994
99.4197
97.0087
68.4176
325519324310097
97.0000
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.7705
99.7193
97.8396
67.4095
181155118115400388
97.0000
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.7705
99.7193
97.8396
67.4095
181155118115400388
97.0000
mlin-fermikitINDELI6_15lowcmp_SimpleRepeat_diTR_11to50*
80.9241
70.7711
94.4782
66.0416
1707705171110097
97.0000
raldana-dualsentieonINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
95.2210
94.2188
96.2448
59.6025
2575158256310097
97.0000
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
50.5742
45.9865
56.1787
51.4566
10232120181013879087671
97.0030
hfeng-pmm2INDELD6_15HG002compoundhet*
95.3103
92.7251
98.0438
33.3983
83746578370167162
97.0060
jmaeng-gatkINDEL**homalt
99.5485
99.8690
99.2301
59.0290
125008164125021970941
97.0103
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
64.9932
93.6517
49.7646
52.1813
7863533782278967660
97.0111
mlin-fermikitINDEL*HG002complexvarhomalt
95.7600
96.3222
95.2043
55.1307
260339942592713061267
97.0138
mlin-fermikitINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
68.8811
63.9610
74.6212
70.9571
394222394134130
97.0149
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.4229
96.3710
98.4980
52.1860
30831116130755469455
97.0149
ghariani-varprowlINDELI16_PLUSHG002complexvarhet
78.0918
86.6165
71.0947
66.0117
57689578235228
97.0213
mlin-fermikitSNPtiHG002complexvarhomalt
98.3813
98.4958
98.2669
18.8239
190554291019057233613261
97.0247
eyeh-varpipeINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50het
70.1872
69.5761
70.8092
55.2972
27912224510198
97.0297
cchapple-customINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
99.1720
99.7378
98.6126
26.3903
722819717910198
97.0297
jli-customINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
99.4474
99.8648
99.0334
44.0841
10343141034810198
97.0297
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
75.0034
74.5856
75.4258
72.2485
2709231010198
97.0297
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
86.0468
96.6402
77.5463
56.5992
3164110372310781046
97.0315
gduggal-snapfbINDELI6_15*het
80.8118
75.9494
86.3394
31.4688
762024131215419231866
97.0359
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
87.6898
82.8388
93.1443
61.7926
13318275913301979950
97.0378
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
87.6898
82.8388
93.1443
61.7926
13318275913301979950
97.0378
mlin-fermikitINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
94.5891
93.3138
95.8997
71.5881
6012343086006125682492
97.0405
jpowers-varprowlINDEL*HG002complexvarhet
92.4718
94.5577
90.4760
57.5873
4369725154368045984462
97.0422
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
84.3874
97.5345
74.3636
48.4035
8189207867629912903
97.0578
rpoplin-dv42INDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
96.7679
94.4049
99.2523
24.5186
450526745133433
97.0588
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
88.9406
86.2302
91.8269
26.6314
382613823433
97.0588
eyeh-varpipeINDELD16_PLUS*hetalt
28.3581
16.7098
93.6210
67.5396
32316104993433
97.0588
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
28.2195
16.6235
93.3071
68.0905
32116104743433
97.0588
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
97.4972
95.5852
99.4871
26.0156
658230465953433
97.0588
dgrover-gatkINDELD6_15HG002compoundhethetalt
97.2251
94.9945
99.5630
24.6392
774340877473433
97.0588
ckim-isaacINDELI1_5HG002compoundhethomalt
68.0851
72.9483
63.8298
82.4627
24089240136132
97.0588
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
97.3908
95.3819
99.4860
25.9321
656831865813433
97.0588
astatham-gatkINDELD6_15HG002compoundhethetalt
97.1670
94.8841
99.5625
24.4483
773441777383433
97.0588
bgallagher-sentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
94.8171
100.0000
90.1449
70.2842
31103113433
97.0588
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
28.2195
16.6235
93.3071
68.0905
32116104743433
97.0588
gduggal-bwafbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
93.1414
92.1902
94.1126
70.7669
10869210876866
97.0588
jli-customINDELD6_15HG002compoundhethetalt
97.6428
95.7919
99.5667
24.6880
780834378123433
97.0588
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
94.1277
91.4144
97.0070
58.8480
220420722046866
97.0588
hfeng-pmm2INDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
96.2480
98.0066
94.5513
51.4774
590125903433
97.0588
ghariani-varprowlINDEL*lowcmp_SimpleRepeat_quadTR_51to200het
49.8073
85.3306
35.1672
63.7131
82614283115321487
97.0627