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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
76351-76400 / 86044 show all
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.7459
99.6917
97.8179
67.5313
181105618110404391
96.7822
hfeng-pmm3INDEL*HG002compoundhet*
94.8142
92.3999
97.3580
58.7757
27683227727564748724
96.7914
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
97.1583
99.0954
95.2956
68.4624
3834353788187181
96.7914
rpoplin-dv42INDEL**hetalt
95.6899
92.3010
99.3372
57.2847
23294194323381156151
96.7949
qzeng-customINDELD1_5HG002compoundhethomalt
77.4248
96.9072
64.4647
67.2143
2829283156151
96.7949
egarrison-hhgaINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
88.3620
96.8555
81.2380
64.5325
5421176594513731329
96.7953
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.7571
99.7248
97.8080
67.5218
181165018116406393
96.7980
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.7571
99.7248
97.8080
67.5218
181165018116406393
96.7980
mlin-fermikitSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
98.6888
99.4087
97.9793
56.5956
6052366061125121
96.8000
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
90.2830
86.8621
93.9845
38.9075
1087616451660810631029
96.8015
dgrover-gatkINDELD16_PLUSHG002compoundhet*
95.7397
95.5147
95.9657
35.4749
223610522369491
96.8085
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
75.4613
91.1765
64.3669
39.3284
77575849470455
96.8085
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
94.7617
96.8094
92.7988
67.6203
36411203634282273
96.8085
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
94.7617
96.8094
92.7988
67.6203
36411203634282273
96.8085
mlin-fermikitINDELI1_5lowcmp_SimpleRepeat_diTR_11to50het
89.8601
93.0301
86.8990
65.5793
1268951247188182
96.8085
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
85.6750
96.3113
77.1544
58.1338
4282164497814741427
96.8114
gduggal-bwaplatINDELI1_5*hetalt
82.6726
71.4515
98.0748
76.8337
799931967998157152
96.8153
mlin-fermikitINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
92.0469
94.0521
90.1255
39.8201
9788619976610701036
96.8224
bgallagher-sentieonINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
91.1411
91.0204
91.2621
58.1544
669666586361
96.8254
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
95.7723
96.7851
94.7804
58.3362
11443811446361
96.8254
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
98.8066
99.2505
98.3666
68.3281
38402937946361
96.8254
gduggal-bwafbINDELD16_PLUS*het
87.0129
80.9433
94.0664
49.5246
25576023995252244
96.8254
hfeng-pmm3INDEL*lowcmp_SimpleRepeat_diTR_51to200*
84.7851
78.2485
92.5134
54.4520
16444571557126122
96.8254
jpowers-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50*
49.3151
45.8599
53.3333
66.3342
7285726361
96.8254
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
66.0309
61.2472
71.6250
49.8874
1082368481083442924156
96.8313
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
66.0309
61.2472
71.6250
49.8874
1082368481083442924156
96.8313
ghariani-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
34.8549
24.7113
59.1245
71.3782
9632934959663642
96.8326
gduggal-snapvardINDELD1_5*homalt
90.7791
84.7811
97.6903
44.1687
4148074464411510431010
96.8360
eyeh-varpipeINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200homalt
44.5283
92.9134
29.2804
23.5294
1189118285276
96.8421
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
98.2738
99.4197
97.1540
68.7190
32551932439592
96.8421
dgrover-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
95.4228
99.0946
92.0135
66.0676
2189202189190184
96.8421
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
86.8949
85.2839
88.5680
60.6534
7361277369592
96.8421
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
99.0283
99.8745
98.1963
46.0818
103441310344190184
96.8421
mlin-fermikitINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
93.6687
95.2332
92.1549
68.7890
4597023014578938983775
96.8445
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
92.5136
96.5980
88.7606
66.4930
175486181752422192149
96.8454
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
92.5136
96.5980
88.7606
66.4930
175486181752422192149
96.8454
ckim-dragenINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
95.9552
95.8879
96.0225
64.6127
30781323066127123
96.8504
jlack-gatkINDELI16_PLUSHG002compoundhethomalt
4.5113
100.0000
2.3077
65.0538
303127123
96.8504
mlin-fermikitSNPtvHG002complexvarhomalt
98.2029
98.2799
98.1261
24.4893
9347516369347117851729
96.8627
rpoplin-dv42INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.4805
97.1646
97.7985
57.9258
1559245515593351340
96.8661
mlin-fermikitINDELI6_15lowcmp_SimpleRepeat_diTR_11to50homalt
89.9930
98.6928
82.7027
78.7356
15121533231
96.8750
rpoplin-dv42SNP*map_l150_m1_e0homalt
99.3277
98.9444
99.7139
71.2907
11154119111543231
96.8750
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
98.3623
99.9488
96.8254
41.7173
1952119526462
96.8750
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_triTR_11to50het
94.3107
93.3144
95.3285
30.1733
656476533231
96.8750
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
30.0306
17.9045
93.0510
37.7282
85139028576462
96.8750
ghariani-varprowlINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
63.8406
59.0164
69.5238
78.0335
7250733231
96.8750
asubramanian-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
95.8269
92.5398
99.3561
30.5284
441635649383231
96.8750
bgallagher-sentieonINDELI1_5HG002complexvarhomalt
99.8440
99.9256
99.7625
52.9997
1343810134433231
96.8750
hfeng-pmm2INDELI1_5HG002compoundhethet
89.4149
87.4118
91.5119
86.7066
7431076906462
96.8750
hfeng-pmm3INDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
95.9803
97.1761
94.8136
51.0706
585175853231
96.8750