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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
76301-76350 / 86044 show all
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
96.9690
95.8766
98.0866
62.3435
313913531276159
96.7213
jli-customINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8267
99.9315
99.7221
75.0916
2188415218886159
96.7213
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.1310
94.7620
99.6215
40.8094
15830875160566159
96.7213
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
97.1310
94.7620
99.6215
40.8094
15830875160566159
96.7213
jmaeng-gatkINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
91.1188
90.7483
91.4923
58.4348
667686566159
96.7213
ghariani-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
29.6692
20.3322
54.8638
69.9063
7102782705580561
96.7241
gduggal-bwavardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
32.9929
22.6568
60.6716
52.9029
134445881319855827
96.7251
gduggal-bwavardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
70.2185
89.1892
57.9025
52.1104
11881441176855827
96.7251
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
92.0621
91.0745
93.0713
64.3876
37043633694275266
96.7273
ciseli-customINDELI6_15HG002compoundhet*
2.2462
1.5497
4.0797
35.3639
136864012930332934
96.7359
cchapple-customINDELD6_15HG002compoundhet*
95.2970
93.9320
96.7022
31.4437
84835489882337326
96.7359
ghariani-varprowlINDELI1_5HG002compoundhet*
10.6218
8.4898
14.1837
70.9227
104911307103362506046
96.7360
gduggal-bwafbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
55.3614
47.3958
66.5455
70.9916
1822021839289
96.7391
asubramanian-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
94.8184
97.5347
92.2494
57.4247
6331610959289
96.7391
eyeh-varpipeINDEL*segduphomalt
94.0927
96.8750
91.4657
93.3366
930309869289
96.7391
ghariani-varprowlINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
33.8478
32.4294
35.3960
74.1660
861179485815661515
96.7433
gduggal-snapfbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
67.8720
57.3310
83.1622
50.3568
200214901215246238
96.7480
raldana-dualsentieonINDEL*HG002complexvarhomalt
99.7249
99.9038
99.5467
56.9673
270012627010123119
96.7480
egarrison-hhgaINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
88.7284
98.2608
80.8820
41.3226
102261811056424972416
96.7561
ghariani-varprowlINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
64.2811
94.3173
48.7547
73.3962
127877129213581314
96.7599
mlin-fermikitINDELI16_PLUS*het
86.1646
90.3606
82.3411
68.6094
24562622448525508
96.7619
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
33.7984
28.7018
41.0959
58.9386
6921719690989957
96.7644
mlin-fermikitSNPti*homalt
99.0118
99.0588
98.9648
15.5441
795481755879550283218052
96.7672
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.5692
95.2826
97.8910
53.1171
36114178835925774749
96.7700
raldana-dualsentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
95.0920
99.6785
90.9091
69.4991
31013103130
96.7742
mlin-fermikitINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
97.9660
97.1407
98.8054
65.3168
25827625643130
96.7742
ghariani-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
65.3486
79.2683
55.5874
80.4810
19551194155150
96.7742
ghariani-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
78.1322
87.6543
70.4762
77.5161
7110743130
96.7742
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
95.2032
91.8723
98.7848
43.0326
253222425203130
96.7742
jli-customINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
98.2100
97.1081
99.3372
24.1239
463413846463130
96.7742
jpowers-varprowlINDELD16_PLUSHG002complexvarhet
82.6837
86.0885
79.5380
63.2839
953154964248240
96.7742
jpowers-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50het
60.2273
86.8852
46.0870
64.8318
538536260
96.7742
jli-customINDELD1_5*homalt
99.8764
99.9428
99.8102
61.2620
4889828489049390
96.7742
hfeng-pmm2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.3867
94.8287
97.9968
59.1527
304416630336260
96.7742
hfeng-pmm3INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.4683
94.9844
97.9994
58.6524
304916130376260
96.7742
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
95.6376
96.4467
94.8419
58.7509
11404211406260
96.7742
ciseli-customINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200homalt
42.0233
85.0394
27.9070
48.4000
10819108279270
96.7742
ciseli-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
61.9624
60.8696
63.0952
62.8319
5636533130
96.7742
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
97.8789
99.1218
96.6667
63.6387
27092426979390
96.7742
dgrover-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
95.0745
98.9726
91.4718
82.4269
86796656260
96.7742
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
97.0467
94.6710
99.5447
27.5976
673337967773130
96.7742
asubramanian-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
95.8836
92.6404
99.3621
26.9063
430534248293130
96.7742
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.9798
94.5444
99.5441
27.3611
672438867683130
96.7742
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.9771
94.5358
99.5479
27.9803
678239268263130
96.7742
gduggal-bwavardSNPtisegduphomalt
98.7626
97.9614
99.5771
88.2815
735215373003130
96.7742
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
55.5323
39.1709
95.3662
55.2807
4637196383130
96.7742
eyeh-varpipeINDELD6_15segduphomalt
71.4286
90.0000
59.2105
90.9524
455453130
96.7742
eyeh-varpipeINDELI16_PLUSHG002complexvarhomalt
76.6428
68.6084
86.8085
37.6658
212972043130
96.7742
jpowers-varprowlINDELI1_5**
89.2914
86.7586
91.9765
55.5394
130714199501305911139211025
96.7784
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.7459
99.6917
97.8179
67.5313
181105618110404391
96.7822