PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
76251-76300 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 93.3628 | 100.0000 | 87.5519 | 69.2994 | 211 | 0 | 211 | 30 | 29 | 96.6667 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.5450 | 87.1936 | 98.5962 | 31.1755 | 2063 | 303 | 2107 | 30 | 29 | 96.6667 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 95.8385 | 93.1558 | 98.6804 | 28.6536 | 6683 | 491 | 6730 | 90 | 87 | 96.6667 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.5615 | 93.9687 | 99.3014 | 25.3607 | 3786 | 243 | 4264 | 30 | 29 | 96.6667 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.4212 | 93.4764 | 99.5575 | 27.4245 | 6706 | 468 | 6750 | 30 | 29 | 96.6667 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.9440 | 94.4163 | 99.6108 | 25.7275 | 7643 | 452 | 7678 | 30 | 29 | 96.6667 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.9287 | 94.3839 | 99.6144 | 27.9429 | 7714 | 459 | 7750 | 30 | 29 | 96.6667 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 94.4878 | 95.3191 | 93.6709 | 57.5649 | 448 | 22 | 444 | 30 | 29 | 96.6667 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.1701 | 95.0166 | 99.4235 | 24.0070 | 5167 | 271 | 5174 | 30 | 29 | 96.6667 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.5261 | 91.8816 | 95.2305 | 60.9680 | 1211 | 107 | 1198 | 60 | 58 | 96.6667 | |
| ckim-isaac | INDEL | D6_15 | HG002compoundhet | homalt | 40.0881 | 54.1667 | 31.8182 | 65.3543 | 13 | 11 | 14 | 30 | 29 | 96.6667 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 97.0680 | 94.6510 | 99.6117 | 25.8826 | 7662 | 433 | 7696 | 30 | 29 | 96.6667 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 63.4640 | 52.6659 | 79.8319 | 50.6633 | 1857 | 1669 | 475 | 120 | 116 | 96.6667 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 71.1515 | 58.0150 | 91.9786 | 49.4595 | 1473 | 1066 | 344 | 30 | 29 | 96.6667 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 63.4640 | 52.6659 | 79.8319 | 50.6633 | 1857 | 1669 | 475 | 120 | 116 | 96.6667 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 55.1724 | 41.2831 | 83.1461 | 72.8659 | 296 | 421 | 296 | 60 | 58 | 96.6667 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 58.1841 | 43.2904 | 88.7006 | 71.9789 | 471 | 617 | 471 | 60 | 58 | 96.6667 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 91.0964 | 94.2553 | 88.1423 | 65.1755 | 443 | 27 | 446 | 60 | 58 | 96.6667 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.6889 | 92.8520 | 96.5999 | 48.0063 | 2559 | 197 | 2557 | 90 | 87 | 96.6667 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 95.3988 | 100.0000 | 91.2023 | 70.8298 | 311 | 0 | 311 | 30 | 29 | 96.6667 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 58.1944 | 52.8736 | 64.7059 | 67.8030 | 46 | 41 | 55 | 30 | 29 | 96.6667 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 68.9695 | 59.5506 | 81.9277 | 62.6126 | 106 | 72 | 136 | 30 | 29 | 96.6667 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 82.4798 | 81.3830 | 83.6066 | 48.1586 | 153 | 35 | 153 | 30 | 29 | 96.6667 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 58.9524 | 49.6815 | 72.4771 | 51.3393 | 78 | 79 | 79 | 30 | 29 | 96.6667 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.0322 | 99.6364 | 96.4789 | 69.7121 | 822 | 3 | 822 | 30 | 29 | 96.6667 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.0322 | 99.6364 | 96.4789 | 69.7121 | 822 | 3 | 822 | 30 | 29 | 96.6667 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.2559 | 99.3087 | 99.2032 | 69.9329 | 3735 | 26 | 3735 | 30 | 29 | 96.6667 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.2559 | 99.3087 | 99.2032 | 69.9329 | 3735 | 26 | 3735 | 30 | 29 | 96.6667 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 79.6536 | 70.7724 | 91.0837 | 56.4003 | 2758 | 1139 | 1849 | 181 | 175 | 96.6851 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 52.6451 | 49.8736 | 55.7428 | 73.7700 | 1776 | 1785 | 1786 | 1418 | 1371 | 96.6855 | |
| mlin-fermikit | SNP | * | map_siren | homalt | 84.4526 | 80.6077 | 88.6825 | 45.6664 | 44460 | 10696 | 44453 | 5673 | 5485 | 96.6861 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 25.9640 | 21.0884 | 33.7719 | 34.7639 | 155 | 580 | 154 | 302 | 292 | 96.6887 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 69.3724 | 82.3394 | 59.9338 | 79.2083 | 359 | 77 | 362 | 242 | 234 | 96.6942 | |
| asubramanian-gatk | INDEL | I1_5 | HG002compoundhet | homalt | 72.5446 | 98.7842 | 57.3192 | 87.8143 | 325 | 4 | 325 | 242 | 234 | 96.6942 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 44.8723 | 35.0206 | 62.4365 | 72.5902 | 2214 | 4108 | 2214 | 1332 | 1288 | 96.6967 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 44.8723 | 35.0206 | 62.4365 | 72.5902 | 2214 | 4108 | 2214 | 1332 | 1288 | 96.6967 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 50.9371 | 34.6330 | 96.2465 | 52.9921 | 3846 | 7259 | 5436 | 212 | 205 | 96.6981 | |
| mlin-fermikit | INDEL | D1_5 | HG002complexvar | homalt | 96.1786 | 96.9145 | 95.4537 | 57.9255 | 10271 | 327 | 10183 | 485 | 469 | 96.7010 | |
| gduggal-snapfb | INDEL | I6_15 | * | homalt | 78.8948 | 72.1430 | 87.0410 | 39.6459 | 4501 | 1738 | 4480 | 667 | 645 | 96.7016 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 75.9055 | 69.1535 | 84.1187 | 50.6034 | 482 | 215 | 482 | 91 | 88 | 96.7033 | |
| gduggal-bwafb | INDEL | I1_5 | * | homalt | 98.8253 | 98.7076 | 98.9433 | 52.6434 | 59647 | 781 | 59646 | 637 | 616 | 96.7033 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 81.8219 | 73.9368 | 91.5896 | 61.6810 | 3929 | 1385 | 2973 | 273 | 264 | 96.7033 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.0900 | 99.5359 | 98.6480 | 56.8443 | 6648 | 31 | 6640 | 91 | 88 | 96.7033 | |
| anovak-vg | INDEL | I1_5 | HG002complexvar | homalt | 67.3378 | 96.3340 | 51.7586 | 45.0635 | 12955 | 493 | 13156 | 12262 | 11858 | 96.7053 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.1286 | 95.4588 | 98.8579 | 46.1719 | 13159 | 626 | 13157 | 152 | 147 | 96.7105 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.2519 | 95.6239 | 98.9362 | 48.5377 | 14138 | 647 | 14136 | 152 | 147 | 96.7105 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 52.6401 | 36.2653 | 95.9758 | 39.3144 | 3756 | 6601 | 5080 | 213 | 206 | 96.7136 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 47.0936 | 38.2121 | 61.3540 | 79.0423 | 436 | 705 | 435 | 274 | 265 | 96.7153 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 84.7836 | 98.6301 | 74.3463 | 50.8169 | 6624 | 92 | 6625 | 2286 | 2211 | 96.7192 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.5000 | 95.0156 | 98.0316 | 58.6414 | 3050 | 160 | 3038 | 61 | 59 | 96.7213 | |