PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
75651-75700 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | D6_15 | HG002complexvar | homalt | 99.0678 | 100.0000 | 98.1528 | 62.7696 | 1169 | 0 | 1169 | 22 | 21 | 95.4545 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 85.8567 | 85.0746 | 86.6532 | 64.3732 | 855 | 150 | 857 | 132 | 126 | 95.4545 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 55.9562 | 40.2810 | 91.6031 | 29.1892 | 688 | 1020 | 240 | 22 | 21 | 95.4545 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 75.4062 | 69.0323 | 83.0769 | 78.2609 | 107 | 48 | 108 | 22 | 21 | 95.4545 | |
| gduggal-snapvard | SNP | tv | segdup | homalt | 98.3768 | 97.4676 | 99.3031 | 90.1749 | 3156 | 82 | 3135 | 22 | 21 | 95.4545 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 79.8588 | 70.1897 | 92.6174 | 71.9397 | 259 | 110 | 276 | 22 | 21 | 95.4545 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 83.4086 | 85.9259 | 81.0345 | 77.7778 | 116 | 19 | 94 | 22 | 21 | 95.4545 | |
| ciseli-custom | INDEL | I6_15 | map_siren | het | 39.1268 | 27.9720 | 65.0794 | 86.1842 | 40 | 103 | 41 | 22 | 21 | 95.4545 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.1825 | 99.6937 | 96.7164 | 71.0458 | 651 | 2 | 648 | 22 | 21 | 95.4545 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 37.7984 | 31.9149 | 46.3415 | 77.5956 | 15 | 32 | 19 | 22 | 21 | 95.4545 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 60.7229 | 93.3333 | 45.0000 | 76.4706 | 14 | 1 | 18 | 22 | 21 | 95.4545 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 83.4086 | 85.9259 | 81.0345 | 77.7778 | 116 | 19 | 94 | 22 | 21 | 95.4545 | |
| dgrover-gatk | INDEL | D16_PLUS | HG002compoundhet | het | 89.2587 | 99.2593 | 81.0888 | 59.0856 | 402 | 3 | 283 | 66 | 63 | 95.4545 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 83.0580 | 85.1852 | 81.0345 | 77.8626 | 115 | 20 | 94 | 22 | 21 | 95.4545 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.4130 | 97.1455 | 97.6820 | 62.4233 | 42098 | 1237 | 41887 | 994 | 949 | 95.4728 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 54.2480 | 71.5164 | 43.6969 | 32.3548 | 349 | 139 | 1903 | 2452 | 2341 | 95.4731 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 44.3676 | 44.4859 | 44.2500 | 32.4739 | 1073 | 1339 | 1947 | 2453 | 2342 | 95.4749 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.6306 | 98.1744 | 99.0911 | 41.2071 | 24092 | 448 | 24094 | 221 | 211 | 95.4751 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 77.5015 | 89.8990 | 68.1090 | 63.2249 | 1958 | 220 | 2125 | 995 | 950 | 95.4774 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.5878 | 99.1228 | 96.0996 | 69.2547 | 4407 | 39 | 4361 | 177 | 169 | 95.4802 | |
| hfeng-pmm3 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.7158 | 99.7919 | 99.6397 | 70.7329 | 30697 | 64 | 30697 | 111 | 106 | 95.4955 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 82.8480 | 83.5616 | 82.1464 | 73.3422 | 732 | 144 | 819 | 178 | 170 | 95.5056 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 91.8644 | 98.7250 | 85.8954 | 82.3891 | 542 | 7 | 542 | 89 | 85 | 95.5056 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 79.2669 | 90.1745 | 70.7134 | 62.8847 | 1964 | 214 | 2260 | 936 | 894 | 95.5128 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.7654 | 98.4474 | 99.0855 | 41.1980 | 24159 | 381 | 24161 | 223 | 213 | 95.5157 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 72.4419 | 70.6939 | 74.2785 | 64.5876 | 7121 | 2952 | 7026 | 2433 | 2324 | 95.5199 | |
| mlin-fermikit | INDEL | I16_PLUS | HG002complexvar | * | 84.0504 | 79.8319 | 88.7395 | 68.1648 | 1045 | 264 | 1056 | 134 | 128 | 95.5224 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 91.6782 | 96.9631 | 86.9396 | 76.4300 | 894 | 28 | 892 | 134 | 128 | 95.5224 | |
| jpowers-varprowl | INDEL | D6_15 | map_l100_m1_e0 | * | 66.4730 | 62.7907 | 70.6140 | 85.6874 | 162 | 96 | 161 | 67 | 64 | 95.5224 | |
| jpowers-varprowl | INDEL | D6_15 | map_l100_m1_e0 | het | 74.6753 | 91.2698 | 63.1868 | 86.5683 | 115 | 11 | 115 | 67 | 64 | 95.5224 | |
| jpowers-varprowl | INDEL | D6_15 | map_l100_m2_e0 | * | 66.7463 | 62.8788 | 71.1207 | 86.3369 | 166 | 98 | 165 | 67 | 64 | 95.5224 | |
| jpowers-varprowl | INDEL | D6_15 | map_l100_m2_e0 | het | 74.6835 | 90.0763 | 63.7838 | 87.1438 | 118 | 13 | 118 | 67 | 64 | 95.5224 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 72.2252 | 97.0052 | 57.5294 | 65.0968 | 13345 | 412 | 13375 | 9874 | 9432 | 95.5236 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 72.2252 | 97.0052 | 57.5294 | 65.0968 | 13345 | 412 | 13375 | 9874 | 9432 | 95.5236 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 67.2507 | 57.7531 | 80.4869 | 56.9596 | 3069 | 2245 | 2215 | 537 | 513 | 95.5307 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 94.4513 | 96.2447 | 92.7236 | 43.0556 | 2281 | 89 | 2281 | 179 | 171 | 95.5307 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 92.0843 | 97.2973 | 87.4016 | 37.3944 | 684 | 19 | 777 | 112 | 107 | 95.5357 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.2813 | 99.4514 | 97.1385 | 53.8661 | 11421 | 63 | 11406 | 336 | 321 | 95.5357 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 95.9582 | 94.9341 | 97.0045 | 63.7624 | 3673 | 196 | 3627 | 112 | 107 | 95.5357 | |
| eyeh-varpipe | INDEL | I1_5 | * | * | 94.9923 | 93.5665 | 96.4622 | 53.4954 | 140971 | 9693 | 141103 | 5175 | 4944 | 95.5362 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 86.6071 | 96.2085 | 78.7482 | 40.9794 | 203 | 8 | 1082 | 292 | 279 | 95.5479 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 85.7747 | 91.3682 | 80.8266 | 73.3477 | 1990 | 188 | 1897 | 450 | 430 | 95.5556 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 65.1949 | 54.6559 | 80.7692 | 61.1940 | 135 | 112 | 189 | 45 | 43 | 95.5556 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 90.3952 | 98.3425 | 83.6364 | 84.1954 | 356 | 6 | 230 | 45 | 43 | 95.5556 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.9613 | 99.3365 | 98.5889 | 49.3810 | 3144 | 21 | 3144 | 45 | 43 | 95.5556 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.1601 | 96.8618 | 99.4937 | 40.9343 | 17686 | 573 | 17687 | 90 | 86 | 95.5556 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.6494 | 97.0713 | 98.2344 | 36.6573 | 9181 | 277 | 10015 | 180 | 172 | 95.5556 | |
| dgrover-gatk | INDEL | D1_5 | * | hetalt | 97.3217 | 95.1977 | 99.5427 | 63.5299 | 9753 | 492 | 9795 | 45 | 43 | 95.5556 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.4732 | 98.9378 | 98.0130 | 65.7049 | 12388 | 133 | 12233 | 248 | 237 | 95.5645 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.7709 | 99.7523 | 97.8086 | 67.6045 | 18121 | 45 | 18121 | 406 | 388 | 95.5665 | |