PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
75351-75400 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 78.5568 | 68.4713 | 92.1266 | 57.1031 | 645 | 297 | 1135 | 97 | 92 | 94.8454 | |
| anovak-vg | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 69.4306 | 91.0941 | 56.0913 | 63.9073 | 3222 | 315 | 5258 | 4116 | 3904 | 94.8494 | |
| mlin-fermikit | SNP | tv | map_l100_m1_e0 | homalt | 71.5194 | 65.9516 | 78.1139 | 49.8226 | 5964 | 3079 | 5964 | 1671 | 1585 | 94.8534 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 43.8454 | 39.1619 | 49.8013 | 62.4191 | 757 | 1176 | 752 | 758 | 719 | 94.8549 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 96.9023 | 98.2941 | 95.5493 | 68.7291 | 3803 | 66 | 3757 | 175 | 166 | 94.8571 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 85.6343 | 78.9796 | 93.5135 | 45.7111 | 387 | 103 | 2249 | 156 | 148 | 94.8718 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 83.2117 | 93.4426 | 75.0000 | 70.8955 | 114 | 8 | 117 | 39 | 37 | 94.8718 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.8994 | 96.0896 | 99.7786 | 37.7218 | 17545 | 714 | 17577 | 39 | 37 | 94.8718 | |
| hfeng-pmm3 | INDEL | I6_15 | * | * | 97.8954 | 96.7812 | 99.0356 | 49.5509 | 24024 | 799 | 24029 | 234 | 222 | 94.8718 | |
| raldana-dualsentieon | INDEL | D6_15 | HG002complexvar | * | 96.9018 | 94.6813 | 99.2289 | 57.2443 | 5020 | 282 | 5019 | 39 | 37 | 94.8718 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 86.8106 | 91.8782 | 82.2727 | 58.6466 | 181 | 16 | 181 | 39 | 37 | 94.8718 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.6836 | 92.7338 | 94.6530 | 63.9970 | 5641 | 442 | 5523 | 312 | 296 | 94.8718 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 91.4428 | 98.3425 | 85.4478 | 84.5800 | 356 | 6 | 229 | 39 | 37 | 94.8718 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.1571 | 94.8660 | 99.5615 | 32.7282 | 8814 | 477 | 8855 | 39 | 37 | 94.8718 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.1571 | 94.8660 | 99.5615 | 32.7282 | 8814 | 477 | 8855 | 39 | 37 | 94.8718 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.0004 | 95.5487 | 96.4564 | 45.2361 | 9037 | 421 | 9037 | 332 | 315 | 94.8795 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.7805 | 96.6355 | 96.9260 | 63.2253 | 3102 | 108 | 3090 | 98 | 93 | 94.8980 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.0371 | 93.4243 | 94.6580 | 64.2218 | 5683 | 400 | 5564 | 314 | 298 | 94.9045 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 98.4961 | 97.7763 | 99.2266 | 43.2593 | 20138 | 458 | 20142 | 157 | 149 | 94.9045 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 29.7953 | 74.0000 | 18.6528 | 60.2062 | 37 | 13 | 36 | 157 | 149 | 94.9045 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 96.8947 | 98.7270 | 95.1293 | 53.9091 | 7290 | 94 | 7285 | 373 | 354 | 94.9062 | |
| jpowers-varprowl | INDEL | * | HG002complexvar | * | 91.1605 | 89.9127 | 92.4435 | 54.5762 | 69177 | 7761 | 68949 | 5636 | 5349 | 94.9077 | |
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 89.6870 | 88.2788 | 91.1408 | 63.5606 | 5370 | 713 | 5257 | 511 | 485 | 94.9119 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 72.8639 | 81.3378 | 65.9890 | 43.5053 | 2663 | 611 | 5875 | 3028 | 2874 | 94.9141 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 88.8240 | 95.3174 | 83.1589 | 72.8494 | 916 | 45 | 874 | 177 | 168 | 94.9153 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 96.0096 | 95.7223 | 96.2986 | 71.4542 | 1544 | 69 | 1535 | 59 | 56 | 94.9153 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 81.0523 | 77.6490 | 84.7677 | 58.0295 | 24388 | 7020 | 25176 | 4524 | 4294 | 94.9160 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 81.0523 | 77.6490 | 84.7677 | 58.0295 | 24388 | 7020 | 25176 | 4524 | 4294 | 94.9160 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 60.5607 | 55.5947 | 66.5009 | 43.6531 | 6161 | 4921 | 6019 | 3032 | 2878 | 94.9208 | |
| raldana-dualsentieon | INDEL | D6_15 | * | het | 97.8785 | 97.4810 | 98.2792 | 59.3884 | 11300 | 292 | 11251 | 197 | 187 | 94.9239 | |
| eyeh-varpipe | INDEL | * | * | hetalt | 52.2077 | 35.9353 | 95.4130 | 76.9125 | 9069 | 16168 | 11066 | 532 | 505 | 94.9248 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 60.5212 | 53.0761 | 70.3956 | 56.0815 | 509 | 450 | 516 | 217 | 206 | 94.9309 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 92.5582 | 86.9571 | 98.9306 | 27.1355 | 7107 | 1066 | 7308 | 79 | 75 | 94.9367 | |
| qzeng-custom | SNP | tv | map_siren | homalt | 92.1926 | 85.9107 | 99.4656 | 52.8075 | 14811 | 2429 | 14705 | 79 | 75 | 94.9367 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.7868 | 96.4686 | 99.1416 | 42.5996 | 9124 | 334 | 9124 | 79 | 75 | 94.9367 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.4920 | 97.0234 | 97.9652 | 58.1135 | 17145 | 526 | 17140 | 356 | 338 | 94.9438 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.4920 | 97.0234 | 97.9652 | 58.1135 | 17145 | 526 | 17140 | 356 | 338 | 94.9438 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.6405 | 97.3120 | 97.9712 | 57.8582 | 17196 | 475 | 17191 | 356 | 338 | 94.9438 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.6405 | 97.3120 | 97.9712 | 57.8582 | 17196 | 475 | 17191 | 356 | 338 | 94.9438 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 88.8266 | 96.5799 | 82.2256 | 51.6201 | 15221 | 539 | 16108 | 3482 | 3306 | 94.9454 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.7654 | 96.6355 | 96.8956 | 63.2180 | 3102 | 108 | 3090 | 99 | 94 | 94.9495 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.6969 | 92.8325 | 94.5775 | 63.9536 | 5647 | 436 | 5529 | 317 | 301 | 94.9527 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.2676 | 97.9992 | 98.5375 | 41.6126 | 24049 | 491 | 24053 | 357 | 339 | 94.9580 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 35.1538 | 58.3333 | 25.1572 | 36.4000 | 14 | 10 | 40 | 119 | 113 | 94.9580 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.0489 | 99.3034 | 98.7958 | 56.9516 | 11404 | 80 | 11404 | 139 | 132 | 94.9640 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.2978 | 94.0048 | 98.7055 | 32.8581 | 9847 | 628 | 10599 | 139 | 132 | 94.9640 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 19.2500 | 18.4685 | 20.1005 | 60.4374 | 41 | 181 | 40 | 159 | 151 | 94.9686 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 43.0574 | 79.0698 | 29.5836 | 47.9961 | 476 | 126 | 476 | 1133 | 1076 | 94.9691 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 77.9748 | 79.3985 | 76.6013 | 76.6697 | 528 | 137 | 586 | 179 | 170 | 94.9721 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 53.3749 | 90.5160 | 37.8458 | 56.6360 | 649 | 68 | 643 | 1056 | 1003 | 94.9811 | |