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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
74951-75000 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.8170 | 92.7219 | 99.1258 | 58.3884 | 3771 | 296 | 3742 | 33 | 31 | 93.9394 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.1590 | 93.4295 | 99.0528 | 42.4608 | 2915 | 205 | 3451 | 33 | 31 | 93.9394 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.2667 | 91.9260 | 98.8593 | 33.2487 | 2334 | 205 | 2860 | 33 | 31 | 93.9394 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 95.1496 | 91.6793 | 98.8930 | 34.8700 | 2424 | 220 | 2948 | 33 | 31 | 93.9394 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 94.8557 | 99.0868 | 90.9713 | 82.4616 | 868 | 8 | 665 | 66 | 62 | 93.9394 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 96.6535 | 99.7967 | 93.7023 | 60.6607 | 491 | 1 | 491 | 33 | 31 | 93.9394 | |
| hfeng-pmm1 | INDEL | D16_PLUS | HG002compoundhet | * | 95.0512 | 93.1226 | 97.0614 | 33.7659 | 2180 | 161 | 2180 | 66 | 62 | 93.9394 | |
| gduggal-snapvard | INDEL | D1_5 | HG002complexvar | homalt | 91.8287 | 87.2523 | 96.9117 | 42.9901 | 9247 | 1351 | 9320 | 297 | 279 | 93.9394 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 88.0745 | 87.7173 | 88.4346 | 62.4232 | 757 | 106 | 757 | 99 | 93 | 93.9394 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 53.0409 | 42.6966 | 70.0000 | 56.1753 | 76 | 102 | 77 | 33 | 31 | 93.9394 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.5878 | 96.0095 | 97.1732 | 53.9900 | 14195 | 590 | 14197 | 413 | 388 | 93.9467 | |
| gduggal-bwavard | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 80.6313 | 97.3607 | 68.8080 | 74.0750 | 46997 | 1274 | 47086 | 21345 | 20055 | 93.9564 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 62.0432 | 53.7002 | 73.4554 | 68.7187 | 283 | 244 | 321 | 116 | 109 | 93.9655 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 54.3279 | 87.8989 | 39.3131 | 46.3121 | 2782 | 383 | 2770 | 4276 | 4018 | 93.9663 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 60.3971 | 86.7094 | 46.3362 | 62.7309 | 1083 | 166 | 1075 | 1245 | 1170 | 93.9759 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 60.3971 | 86.7094 | 46.3362 | 62.7309 | 1083 | 166 | 1075 | 1245 | 1170 | 93.9759 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 92.7361 | 97.4125 | 88.4882 | 79.5170 | 640 | 17 | 638 | 83 | 78 | 93.9759 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 93.9836 | 91.7841 | 96.2911 | 69.5456 | 3452 | 309 | 3453 | 133 | 125 | 93.9850 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 93.9836 | 91.7841 | 96.2911 | 69.5456 | 3452 | 309 | 3453 | 133 | 125 | 93.9850 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.0835 | 99.3208 | 98.8474 | 56.8151 | 11406 | 78 | 11406 | 133 | 125 | 93.9850 | |
| mlin-fermikit | SNP | tv | map_l125_m1_e0 | homalt | 63.9810 | 57.3208 | 72.3922 | 52.9173 | 3359 | 2501 | 3359 | 1281 | 1204 | 93.9891 | |
| anovak-vg | INDEL | I1_5 | map_l100_m2_e1 | homalt | 67.1322 | 92.7778 | 52.5941 | 79.0940 | 501 | 39 | 517 | 466 | 438 | 93.9914 | |
| anovak-vg | INDEL | I1_5 | map_l150_m0_e0 | homalt | 68.1120 | 89.5522 | 54.9550 | 90.0627 | 60 | 7 | 61 | 50 | 47 | 94.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.7502 | 96.6355 | 96.8652 | 63.0530 | 3102 | 108 | 3090 | 100 | 94 | 94.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m1_e0 | homalt | 58.8727 | 75.0000 | 48.4536 | 84.8437 | 48 | 16 | 47 | 50 | 47 | 94.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m2_e0 | homalt | 59.3789 | 75.3846 | 48.9796 | 85.4599 | 49 | 16 | 48 | 50 | 47 | 94.0000 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.4742 | 68.8666 | 91.1972 | 34.5622 | 480 | 217 | 518 | 50 | 47 | 94.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.1566 | 89.4121 | 97.2284 | 51.4923 | 3513 | 416 | 3508 | 100 | 94 | 94.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 60.8995 | 44.8091 | 95.0199 | 66.3989 | 669 | 824 | 954 | 50 | 47 | 94.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.9376 | 99.7576 | 94.2726 | 71.9833 | 823 | 2 | 823 | 50 | 47 | 94.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.9376 | 99.7576 | 94.2726 | 71.9833 | 823 | 2 | 823 | 50 | 47 | 94.0000 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 83.3079 | 82.7701 | 83.8526 | 37.1677 | 15113 | 3146 | 15179 | 2923 | 2748 | 94.0130 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 95.8406 | 96.8379 | 94.8635 | 56.7607 | 5880 | 192 | 5873 | 318 | 299 | 94.0252 | |
| rpoplin-dv42 | SNP | * | map_siren | homalt | 99.7831 | 99.6882 | 99.8783 | 53.6066 | 54984 | 172 | 54983 | 67 | 63 | 94.0299 | |
| anovak-vg | INDEL | * | map_l100_m0_e0 | homalt | 75.5926 | 83.8900 | 68.7888 | 82.3948 | 427 | 82 | 443 | 201 | 189 | 94.0299 | |
| ndellapenna-hhga | INDEL | D6_15 | * | het | 92.4134 | 97.5414 | 87.7976 | 56.6240 | 11307 | 285 | 12059 | 1676 | 1576 | 94.0334 | |
| hfeng-pmm3 | INDEL | * | HG002compoundhet | het | 86.9738 | 82.7064 | 91.7055 | 77.8323 | 3386 | 708 | 3151 | 285 | 268 | 94.0351 | |
| anovak-vg | INDEL | * | * | homalt | 74.8405 | 92.1212 | 63.0190 | 50.1342 | 115310 | 9862 | 117434 | 68913 | 64807 | 94.0418 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 95.6924 | 96.0989 | 95.2894 | 42.1888 | 6454 | 262 | 6453 | 319 | 300 | 94.0439 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 85.4358 | 82.8084 | 88.2353 | 65.4739 | 631 | 131 | 630 | 84 | 79 | 94.0476 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 95.6412 | 98.4962 | 92.9471 | 83.5315 | 1310 | 20 | 1107 | 84 | 79 | 94.0476 | |
| mlin-fermikit | SNP | tv | map_l125_m2_e0 | homalt | 64.7739 | 58.2018 | 73.0192 | 57.0520 | 3502 | 2515 | 3502 | 1294 | 1217 | 94.0495 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 87.8316 | 82.7461 | 93.5831 | 40.4184 | 12095 | 2522 | 17909 | 1228 | 1155 | 94.0554 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.4668 | 92.7820 | 94.1618 | 66.2439 | 617 | 48 | 1629 | 101 | 95 | 94.0594 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 95.6283 | 95.0913 | 96.1713 | 57.6972 | 833 | 43 | 2537 | 101 | 95 | 94.0594 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 66.8599 | 89.2948 | 53.4347 | 70.0637 | 1760 | 211 | 1758 | 1532 | 1441 | 94.0601 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 66.8599 | 89.2948 | 53.4347 | 70.0637 | 1760 | 211 | 1758 | 1532 | 1441 | 94.0601 | |
| gduggal-snapfb | INDEL | I6_15 | HG002complexvar | * | 72.9303 | 63.6686 | 85.3453 | 43.1989 | 3051 | 1741 | 3040 | 522 | 491 | 94.0613 | |
| raldana-dualsentieon | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.2233 | 91.0156 | 95.5407 | 66.1212 | 9168 | 905 | 9020 | 421 | 396 | 94.0618 | |
| gduggal-snapfb | INDEL | I6_15 | HG002complexvar | het | 77.1850 | 70.0212 | 85.9817 | 41.0929 | 1649 | 706 | 2067 | 337 | 317 | 94.0653 | |