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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
74651-74700 / 86044 show all
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.0337
96.0444
98.0437
49.4938
1697269918343366341
93.1694
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
48.2780
92.0474
32.7195
37.0781
108894122625212349
93.1773
mlin-fermikitSNPtvmap_l100_m0_e0homalt
61.5471
56.9943
66.8904
49.7701
21921654219210851011
93.1797
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
77.4016
63.6945
98.6259
40.8078
6672380363168882
93.1818
eyeh-varpipeINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
43.1125
69.4915
31.2500
41.9501
411880176164
93.1818
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
89.7585
88.5572
90.9928
62.2488
8901158898882
93.1818
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50*
98.0855
97.5186
98.6590
52.4830
3568490835608484451
93.1818
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.8703
98.0010
99.7551
37.4155
17894365179244441
93.1818
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.1607
93.4776
99.0024
33.2299
868560687338882
93.1818
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.1607
93.4776
99.0024
33.2299
868560687338882
93.1818
anovak-vgSNPtimap_l100_m0_e0homalt
88.2155
79.3671
99.2843
61.2798
6170160461044441
93.1818
ghariani-varprowlINDELD1_5lowcmp_SimpleRepeat_triTR_51to200*
18.8065
16.0000
22.8070
67.0520
1263134441
93.1818
ghariani-varprowlINDELD1_5lowcmp_SimpleRepeat_triTR_51to200het
36.5768
92.3077
22.8070
64.5963
121134441
93.1818
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
88.2450
85.0667
91.6700
56.4134
49738734523411383
93.1873
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
88.2450
85.0667
91.6700
56.4134
49738734523411383
93.1873
gduggal-bwavardINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
48.6144
46.0379
51.4963
68.3816
825967826778725
93.1877
dgrover-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50*
98.5918
98.4368
98.7473
52.7193
3602057235944456425
93.2018
ndellapenna-hhgaINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
94.2017
97.6736
90.9681
70.0370
4714811234845648114484
93.2031
egarrison-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
62.2829
56.8163
68.9135
42.3099
671510685309288
93.2039
hfeng-pmm2INDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
93.2754
89.6920
97.1571
51.8026
3524405352010396
93.2039
cchapple-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
95.7737
95.3383
96.2131
64.2456
1268622998118110
93.2203
asubramanian-gatkINDELI6_15HG002compoundhethetalt
94.9935
91.0859
99.2515
30.1736
777676178235955
93.2203
jpowers-varprowlINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
48.9503
37.9479
68.9379
70.3682
6991143688310289
93.2258
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
46.2389
95.1945
30.5355
26.2146
41621422960895
93.2292
ciseli-customINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
44.1721
50.3828
39.3245
62.5903
329324326503469
93.2406
jmaeng-gatkINDELI16_PLUS*homalt
97.5243
99.6797
95.4601
72.0843
1556515567469
93.2432
rpoplin-dv42INDELD16_PLUS*het
94.0655
97.4042
90.9480
71.1818
3077822974296276
93.2432
gduggal-bwaplatINDELI6_15*hetalt
85.2525
75.5818
97.7610
47.7759
646320886462148138
93.2432
egarrison-hhgaINDELI1_5*hetalt
97.2375
95.2479
99.3119
61.7967
10663532106817469
93.2432
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
80.1806
69.7709
94.2412
74.1188
94440912117469
93.2432
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
84.9840
84.8017
85.1670
81.2419
43417784335755704
93.2450
eyeh-varpipeINDEL*HG002complexvarhet
95.5256
94.2569
96.8290
49.4429
4355826544204813771284
93.2462
ciseli-customINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
31.1207
23.8636
44.7205
61.1580
147469144178166
93.2584
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
90.3658
89.3697
91.3843
78.2572
9501139448983
93.2584
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
83.5727
82.8140
84.3455
36.4989
1512131381519428202630
93.2624
mlin-fermikitSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
98.3991
99.3730
97.4441
42.0040
396225396510497
93.2692
jpowers-varprowlINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50*
71.5827
62.3493
84.0263
65.9228
243114682425461430
93.2755
eyeh-varpipeINDELI1_5HG002complexvarhet
97.2764
97.2566
97.2962
48.7706
1769049917129476444
93.2773
ckim-dragenINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.1784
93.5471
94.8182
69.0265
94236509259506472
93.2806
jli-customINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.7391
98.3237
99.1580
56.4704
1577826915780134125
93.2836
ciseli-customINDELD1_5HG002compoundhethomalt
8.4350
85.5670
4.4361
66.5215
2494224953645004
93.2886
cchapple-customINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
92.5568
89.9466
95.3230
44.4415
35343953954194181
93.2990
mlin-fermikitINDELD1_5HG002complexvar*
96.3667
95.5494
97.1980
54.2316
31259145631081896836
93.3036
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.4367
96.0623
98.8510
34.0969
1978581120562239223
93.3054
mlin-fermikitINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
79.2712
87.6596
72.3480
57.0624
12361741214464433
93.3190
mlin-fermikitINDELI16_PLUSHG002compoundhethetalt
66.4170
50.0717
98.6059
45.0179
1048104510611514
93.3333
mlin-fermikitINDELI6_15map_siren*
81.7172
75.7377
88.7218
80.5981
231742363028
93.3333
mlin-fermikitSNPtilowcmp_SimpleRepeat_quadTR_51to200homalt
76.9887
88.5714
68.0851
93.5351
314321514
93.3333
raldana-dualsentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
96.7985
99.2278
94.4853
59.5238
25722571514
93.3333
raldana-dualsentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.8252
99.7211
97.9452
60.2829
71527151514
93.3333