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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1472 1473 1474 1475 1476 1477 1478 1479 1480 ... 1720 1721 » 73751-73800 / 86044 show all
bgallagher-sentieon	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	homalt	97.2152	100.0000	94.5813	46.4380	192	0	192	11	10	90.9091
astatham-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	96.8974	99.0244	94.8598	91.2653	203	2	203	11	10	90.9091
astatham-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	96.8974	99.0244	94.8598	91.2653	203	2	203	11	10	90.9091
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	97.6650	96.0317	99.3548	89.1657	1694	70	1694	11	10	90.9091
astatham-gatk	SNP	ti	map_l125_m1_e0	homalt	99.4818	99.0675	99.8996	63.1497	10942	103	10942	11	10	90.9091
astatham-gatk	SNP	ti	map_l125_m2_e0	homalt	99.4872	99.0755	99.9023	65.7910	11253	105	11253	11	10	90.9091
astatham-gatk	SNP	ti	map_l125_m2_e1	homalt	99.4917	99.0836	99.9032	65.8143	11353	105	11353	11	10	90.9091
asubramanian-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.3023	95.7627	98.8922	32.9054	904	40	982	11	10	90.9091
asubramanian-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	95.0937	93.1429	97.1279	35.7383	326	24	372	11	10	90.9091
anovak-vg	INDEL	I1_5	map_l250_m2_e0	homalt	68.7117	88.8889	56.0000	95.0723	40	5	42	33	30	90.9091
anovak-vg	INDEL	I1_5	map_l250_m2_e1	homalt	69.2187	89.1304	56.5789	95.1592	41	5	43	33	30	90.9091
astatham-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	94.4480	96.6024	92.3875	77.6266	2104	74	1869	154	140	90.9091
anovak-vg	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	homalt	27.3141	19.1489	47.6190	61.1111	9	38	10	11	10	90.9091
anovak-vg	INDEL	*	tech_badpromoters	*	66.4036	56.5789	80.3571	44.5545	43	33	45	11	10	90.9091
anovak-vg	INDEL	D6_15	map_siren	homalt	83.4332	77.6923	90.0901	82.2967	101	29	100	11	10	90.9091
ckim-gatk	INDEL	D6_15	HG002complexvar	*	98.1151	97.6990	98.5347	58.5306	5180	122	5178	77	70	90.9091
ckim-dragen	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	97.9137	96.7068	99.1511	64.1489	5139	175	5139	44	40	90.9091
ckim-dragen	SNP	ti	map_l100_m2_e0	homalt	99.6194	99.3610	99.8792	57.3994	18192	117	18197	22	20	90.9091
ckim-dragen	SNP	ti	map_l100_m2_e1	homalt	99.6178	99.3565	99.8804	57.3860	18375	119	18380	22	20	90.9091
ckim-dragen	SNP	ti	map_l150_m0_e0	homalt	99.3100	99.0221	99.5996	68.7592	2734	27	2736	11	10	90.9091
ckim-gatk	SNP	*	HG002compoundhet	homalt	99.4644	99.0354	99.8971	35.0629	10678	104	10677	11	10	90.9091
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.4505	99.3666	99.5347	87.4509	2353	15	2353	11	10	90.9091
ckim-isaac	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	79.5118	70.0599	91.9118	65.9148	117	50	125	11	10	90.9091
ckim-isaac	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	92.5151	89.5327	95.7031	72.8238	479	56	490	22	20	90.9091
cchapple-custom	INDEL	I6_15	HG002complexvar	*	97.5496	96.4942	98.6284	54.8042	4624	168	4746	66	60	90.9091
ciseli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	88.6698	84.9899	92.6829	52.2246	419	74	418	33	30	90.9091
ciseli-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	76.3636	91.3043	65.6250	76.2963	21	2	21	11	10	90.9091
ciseli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	33.8948	28.9913	40.7948	49.7853	799	1957	811	1177	1070	90.9091
ciseli-custom	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	*	10.3004	6.3830	26.6667	77.2727	3	44	4	11	10	90.9091
ciseli-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	49.7009	35.0282	85.5263	70.6564	62	115	65	11	10	90.9091
ciseli-custom	INDEL	I6_15	map_l100_m1_e0	*	28.7671	18.4211	65.6250	88.7719	21	93	21	11	10	90.9091
ciseli-custom	INDEL	I6_15	map_l100_m2_e0	*	29.5302	18.9655	66.6667	89.9083	22	94	22	11	10	90.9091
ciseli-custom	INDEL	I6_15	map_l100_m2_e1	*	29.5302	18.9655	66.6667	90.0000	22	94	22	11	10	90.9091
cchapple-custom	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	93.9285	91.4672	96.5260	44.7581	879	82	3362	121	110	90.9091
cchapple-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	93.9600	91.6530	96.3860	42.0652	560	51	2347	88	80	90.9091
cchapple-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	97.3872	100.0000	94.9074	87.3684	205	0	205	11	10	90.9091
cchapple-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	97.3872	100.0000	94.9074	87.3684	205	0	205	11	10	90.9091
ckim-dragen	INDEL	D16_PLUS	HG002complexvar	homalt	95.9866	99.3080	92.8803	75.5924	287	2	287	22	20	90.9091
ckim-dragen	INDEL	D1_5	HG002complexvar	homalt	99.7544	99.8207	99.6881	60.4958	10579	19	10549	33	30	90.9091
ckim-dragen	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	97.8131	97.1129	98.5235	67.3246	740	22	734	11	10	90.9091
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_gt10	het	72.0930	70.4545	73.8095	97.7600	31	13	31	11	10	90.9091
jpowers-varprowl	INDEL	D1_5	func_cds	*	93.0818	93.0818	93.0818	35.6275	148	11	148	11	10	90.9091
jpowers-varprowl	INDEL	D1_5	func_cds	het	93.3333	98.8235	88.4211	41.7178	84	1	84	11	10	90.9091
ltrigg-rtg1	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	85.8671	76.8612	97.2637	69.0054	382	115	391	11	10	90.9091
ltrigg-rtg1	INDEL	I6_15	*	hetalt	94.9898	90.5742	99.8580	43.9696	7745	806	7738	11	10	90.9091
ltrigg-rtg1	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	*	94.3412	90.9091	98.0427	61.3214	560	56	551	11	10	90.9091
jmaeng-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	96.5300	100.0000	93.2927	77.6871	153	0	153	11	10	90.9091
asubramanian-gatk	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	92.5017	90.8883	94.1735	55.0486	3571	358	3572	221	201	90.9502
gduggal-snapvard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	52.4343	64.2857	44.2724	31.6918	477	265	2002	2520	2292	90.9524
gduggal-snapvard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	42.4079	40.5785	44.4101	31.8353	1417	2075	2014	2521	2293	90.9560

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