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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1471 1472 1473 1474 1475 1476 1477 1478 1479 ... 1720 1721 » 73701-73750 / 86044 show all
egarrison-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	93.5628	88.9960	98.6237	42.7471	3138	388	3153	44	40	90.9091
egarrison-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	93.5628	88.9960	98.6237	42.7471	3138	388	3153	44	40	90.9091
egarrison-hhga	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.0531	98.7414	99.3667	63.7370	1726	22	1726	11	10	90.9091
ckim-isaac	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	82.2286	71.0963	97.4943	44.8492	428	174	428	11	10	90.9091
ckim-isaac	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	92.8637	87.9925	98.3058	30.4621	4199	573	4468	77	70	90.9091
ckim-isaac	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	85.7762	80.3859	91.9414	59.8529	250	61	251	22	20	90.9091
ckim-vqsr	INDEL	D6_15	HG002complexvar	*	98.0282	97.5292	98.5322	58.5722	5171	131	5169	77	70	90.9091
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.4293	99.3243	99.5345	87.4555	2352	16	2352	11	10	90.9091
gduggal-bwafb	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	75.5515	69.4611	82.8125	75.1938	116	51	53	11	10	90.9091
gduggal-bwaplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	68.2119	54.7872	90.3509	80.9683	103	85	103	11	10	90.9091
gduggal-bwaplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	74.3814	59.9765	97.8927	91.3619	511	341	511	11	10	90.9091
gduggal-bwavard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	23.9090	13.7056	93.5673	71.9672	162	1020	160	11	10	90.9091
eyeh-varpipe	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	28.6738	21.7391	42.1053	61.2245	5	18	8	11	10	90.9091
eyeh-varpipe	INDEL	D1_5	map_l125_m1_e0	homalt	97.9462	98.2808	97.6139	87.6142	343	6	450	11	10	90.9091
eyeh-varpipe	INDEL	D1_5	map_l125_m2_e0	homalt	98.0337	98.3516	97.7178	87.9259	358	6	471	11	10	90.9091
eyeh-varpipe	INDEL	D1_5	map_l125_m2_e1	homalt	98.0724	98.3871	97.7597	87.9775	366	6	480	11	10	90.9091
eyeh-varpipe	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	19.0780	10.6557	91.0204	63.7574	182	1526	223	22	20	90.9091
eyeh-varpipe	INDEL	D6_15	map_l100_m1_e0	homalt	75.3723	82.8125	69.1589	84.6705	53	11	74	33	30	90.9091
eyeh-varpipe	INDEL	D6_15	map_l125_m2_e0	homalt	81.4394	83.3333	79.6296	89.0909	30	6	43	11	10	90.9091
eyeh-varpipe	INDEL	D6_15	map_l125_m2_e1	homalt	81.6539	83.7838	79.6296	89.2644	31	6	43	11	10	90.9091
eyeh-varpipe	INDEL	I16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	11.8946	6.7961	47.6190	65.8537	14	192	20	22	20	90.9091
eyeh-varpipe	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	83.4783	85.7143	81.3559	70.4013	42	7	144	33	30	90.9091
gduggal-bwafb	INDEL	I16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	18.4100	10.6796	66.6667	69.1589	22	184	22	11	10	90.9091
gduggal-bwafb	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7040	99.5894	99.8189	55.7321	6063	25	6063	11	10	90.9091
gduggal-bwaplat	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	76.0853	63.1134	95.7692	72.6027	746	436	747	33	30	90.9091
gduggal-bwaplat	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	homalt	59.5825	43.7326	93.4524	71.9533	157	202	157	11	10	90.9091
gduggal-bwaplat	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	homalt	85.6847	76.6260	97.1722	71.5227	377	115	378	11	10	90.9091
gduggal-bwaplat	INDEL	*	map_siren	homalt	83.1471	71.4501	99.4235	85.0984	1897	758	1897	11	10	90.9091
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	85.3755	75.1159	98.8810	48.3447	972	322	972	11	10	90.9091
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	48.6558	37.7049	68.5714	84.9138	23	38	24	11	10	90.9091
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	*	40.1132	30.9859	56.8627	26.6187	44	98	58	44	40	90.9091
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	het	48.0929	41.6667	56.8627	26.6187	10	14	58	44	40	90.9091
gduggal-snapfb	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	92.1833	90.4762	93.9560	39.3333	418	44	171	11	10	90.9091
gduggal-snapfb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	73.7705	60.1604	95.3390	57.0128	225	149	225	11	10	90.9091
gduggal-snapfb	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	42.8116	28.1132	89.7196	42.4731	149	381	96	11	10	90.9091
gduggal-snapfb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	70.1721	68.3616	72.0812	51.2376	121	56	142	55	50	90.9091
gduggal-snapvard	INDEL	I1_5	HG002compoundhet	homalt	81.6095	75.9878	88.1295	56.7652	250	79	245	33	30	90.9091
jli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	96.7495	97.6834	95.8333	56.5789	253	6	253	11	10	90.9091
jli-custom	INDEL	D1_5	HG002compoundhet	het	97.4993	98.1481	96.8589	75.3067	1696	32	1696	55	50	90.9091
jlack-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	92.0250	86.0513	98.8900	40.6231	839	136	980	11	10	90.9091
jlack-gatk	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	89.0334	80.6002	99.4376	31.3443	1907	459	1945	11	10	90.9091
jlack-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.1213	99.5294	98.7165	50.0292	846	4	846	11	10	90.9091
jlack-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	96.4903	94.0829	99.0241	51.3046	5581	351	5581	55	50	90.9091
jlack-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	95.3376	93.0985	97.6870	52.9536	3251	241	3252	77	70	90.9091
hfeng-pmm2	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9159	99.9292	99.9026	55.9613	11288	8	11288	11	10	90.9091
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	96.7495	97.6834	95.8333	57.2816	253	6	253	11	10	90.9091
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.8186	99.1632	98.4765	57.3034	711	6	711	11	10	90.9091
asubramanian-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	het	97.8231	97.4321	98.2172	67.5349	1328	35	2424	44	40	90.9091
asubramanian-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_51to200	*	78.9522	71.7391	87.7778	55.4455	66	26	79	11	10	90.9091
asubramanian-gatk	SNP	*	segdup	homalt	98.2111	96.5838	99.8941	88.4606	10376	367	10376	11	10	90.9091

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