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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1469 1470 1471 1472 1473 1474 1475 1476 1477 ... 1720 1721 » 73601-73650 / 86044 show all
qzeng-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	89.4089	97.4545	82.5903	53.4716	804	21	1760	371	336	90.5660
qzeng-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	89.4089	97.4545	82.5903	53.4716	804	21	1760	371	336	90.5660
hfeng-pmm3	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	97.6110	96.3981	98.8550	60.6748	12070	451	11914	138	125	90.5797
egarrison-hhga	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	79.2993	66.3164	98.6030	66.3016	10224	5193	9740	138	125	90.5797
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	het	98.8985	99.2195	98.5796	63.0301	15637	123	15477	223	202	90.5830
ndellapenna-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	94.7857	94.3579	95.2175	45.4647	11205	670	11209	563	510	90.5861
ckim-vqsr	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	95.6964	95.4417	95.9524	73.2314	2031	97	2015	85	77	90.5882
gduggal-bwavard	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	49.6103	86.3158	34.8083	73.4368	574	91	590	1105	1001	90.5882
anovak-vg	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	66.2455	82.5976	55.2980	57.8918	973	205	1670	1350	1223	90.5926
raldana-dualsentieon	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.6413	97.9883	99.3029	72.0487	92549	1900	92457	649	588	90.6009
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	94.5951	96.6483	92.6274	77.7912	2105	73	1872	149	135	90.6040
gduggal-bwavard	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	38.0404	35.5733	40.8751	72.9582	757	1371	766	1108	1004	90.6137
eyeh-varpipe	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	94.6645	94.1361	95.1988	74.6771	899	56	1269	64	58	90.6250
eyeh-varpipe	INDEL	I1_5	map_l100_m2_e0	homalt	97.3779	98.3051	96.4680	82.5231	522	9	874	32	29	90.6250
eyeh-varpipe	INDEL	I1_5	map_l100_m2_e1	homalt	97.3281	98.1481	96.5217	82.5526	530	10	888	32	29	90.6250
mlin-fermikit	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	97.3131	96.7575	97.8752	72.7174	1492	50	1474	32	29	90.6250
rpoplin-dv42	INDEL	I16_PLUS	HG002complexvar	*	93.7832	90.4507	97.3706	62.1815	1184	125	1185	32	29	90.6250
rpoplin-dv42	SNP	*	HG002compoundhet	homalt	99.7682	99.8331	99.7035	35.1268	10764	18	10759	32	29	90.6250
anovak-vg	INDEL	D1_5	map_l100_m2_e1	homalt	89.8740	85.8065	94.3463	82.6911	532	88	534	32	29	90.6250
asubramanian-gatk	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	91.8668	98.5050	86.0668	52.0529	593	9	593	96	87	90.6250
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	97.2451	95.3502	99.2167	55.7798	8018	391	8107	64	58	90.6250
ckim-dragen	SNP	*	map_l125_m1_e0	homalt	99.5672	99.3256	99.8098	61.0436	16791	114	16796	32	29	90.6250
ckim-dragen	SNP	*	map_l125_m2_e0	homalt	99.5644	99.3151	99.8150	63.8939	17256	119	17261	32	29	90.6250
ckim-dragen	SNP	*	map_l125_m2_e1	homalt	99.5683	99.3212	99.8166	63.9224	17413	119	17418	32	29	90.6250
ckim-isaac	INDEL	D1_5	HG002complexvar	hetalt	83.2980	76.1834	91.8782	58.9369	1030	322	1448	128	116	90.6250
egarrison-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	87.0530	88.5102	85.6431	75.6731	1610	209	1718	288	261	90.6250
egarrison-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	87.0530	88.5102	85.6431	75.6731	1610	209	1718	288	261	90.6250
egarrison-hhga	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	62.7001	46.0184	98.3531	38.3761	2196	2576	1911	32	29	90.6250
jlack-gatk	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	95.9102	92.5212	99.5569	59.5559	14264	1153	14381	64	58	90.6250
jlack-gatk	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	91.4321	87.4402	95.8060	67.3513	731	105	731	32	29	90.6250
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	94.9883	95.6391	94.3463	80.9074	1272	58	1068	64	58	90.6250
jpowers-varprowl	INDEL	D6_15	*	homalt	74.3238	61.6345	93.5925	52.0152	3899	2427	3900	267	242	90.6367
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	96.8636	96.4960	97.2340	52.6642	30871	1121	30794	876	794	90.6393
bgallagher-sentieon	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	94.1594	93.5769	94.7492	68.8883	9426	647	9275	514	466	90.6615
astatham-gatk	INDEL	D6_15	HG002complexvar	*	98.3071	98.0385	98.5771	58.5385	5198	104	5196	75	68	90.6667
eyeh-varpipe	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	*	19.5758	15.3515	27.0073	33.7097	107	590	111	300	272	90.6667
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	94.3318	96.1892	92.5447	77.6767	2095	83	1862	150	136	90.6667
rpoplin-dv42	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	91.3657	89.9732	92.8019	79.8114	9063	1010	8999	698	633	90.6877
ndellapenna-hhga	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	94.5857	90.9615	98.5106	44.8835	2838	282	2844	43	39	90.6977
mlin-fermikit	INDEL	D1_5	map_l125_m0_e0	homalt	67.8201	66.2162	69.5035	79.0490	98	50	98	43	39	90.6977
dgrover-gatk	SNP	ti	*	homalt	99.9851	99.9756	99.9946	15.9219	802842	196	802833	43	39	90.6977
eyeh-varpipe	INDEL	*	lowcmp_SimpleRepeat_homopolymer_gt10	homalt	62.3549	57.1429	68.6131	99.8675	12	9	94	43	39	90.6977
jlack-gatk	INDEL	*	*	hetalt	94.2358	89.4005	99.6240	58.0561	22562	2675	22786	86	78	90.6977
gduggal-snapfb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	69.8922	57.3374	89.4866	50.3641	1516	1128	366	43	39	90.6977
ciseli-custom	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	35.9477	45.0820	29.8913	77.7240	55	67	55	129	117	90.6977
cchapple-custom	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.3332	97.2524	99.4383	69.4992	15149	428	15226	86	78	90.6977
ckim-dragen	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.1773	98.9437	99.4120	58.5572	7306	78	7270	43	39	90.6977
ndellapenna-hhga	INDEL	I6_15	HG002compoundhet	homalt	18.3051	87.0968	10.2273	63.1285	27	4	27	237	215	90.7173
jpowers-varprowl	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	97.6658	97.6616	97.6701	52.7872	9940	238	9935	237	215	90.7173
ndellapenna-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	*	88.1593	87.4776	88.8518	37.5644	21467	3073	21551	2704	2453	90.7175

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