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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1463 1464 1465 1466 1467 1468 1469 1470 1471 ... 1720 1721 » 73301-73350 / 86044 show all
eyeh-varpipe	INDEL	*	map_l125_m2_e1	homalt	96.9786	97.2868	96.6724	87.1688	753	21	1133	39	35	89.7436
mlin-fermikit	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	98.3434	99.6186	97.1004	38.0755	1306	5	1306	39	35	89.7436
rpoplin-dv42	INDEL	I1_5	HG002complexvar	*	99.3509	99.0558	99.6477	56.5141	33048	315	33091	117	105	89.7436
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.9346	99.2616	98.6098	64.3360	8334	62	8299	117	105	89.7436
gduggal-bwavard	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	42.8527	36.9227	51.0519	66.2725	1471	2513	1456	1396	1253	89.7564
asubramanian-gatk	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	het	77.8716	90.2041	68.5057	80.6495	442	48	298	137	123	89.7810
mlin-fermikit	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	96.2297	99.8868	92.8310	67.6868	1765	2	1774	137	123	89.7810
gduggal-bwavard	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	59.8779	85.1773	46.1658	67.0074	1201	209	1192	1390	1248	89.7842
ndellapenna-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	*	82.5967	81.0065	84.2506	51.7959	998	234	995	186	167	89.7849
ndellapenna-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	93.7450	89.4498	98.4735	43.0447	3154	372	3161	49	44	89.7959
ndellapenna-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	93.7450	89.4498	98.4735	43.0447	3154	372	3161	49	44	89.7959
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	96.2112	93.3565	99.2459	50.4272	6450	459	6449	49	44	89.7959
ciseli-custom	INDEL	I6_15	*	het	44.4423	31.4363	75.8046	53.6729	3154	6879	3227	1030	925	89.8058
gduggal-bwavard	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	50.3306	47.8296	53.1077	74.2686	2391	2608	2401	2120	1904	89.8113
gduggal-bwavard	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	50.3306	47.8296	53.1077	74.2686	2391	2608	2401	2120	1904	89.8113
ndellapenna-hhga	SNP	tv	HG002complexvar	homalt	99.8464	99.8065	99.8864	22.8760	94927	184	94935	108	97	89.8148
ckim-isaac	INDEL	D1_5	HG002compoundhet	*	88.8135	85.9501	91.8743	43.5269	10516	1719	10436	923	829	89.8158
eyeh-varpipe	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	60.4770	91.1661	45.2459	46.8023	258	25	414	501	450	89.8204
gduggal-bwavard	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	60.0589	91.9736	44.5872	75.8345	1673	146	1701	2114	1899	89.8297
gduggal-bwavard	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	60.0589	91.9736	44.5872	75.8345	1673	146	1701	2114	1899	89.8297
gduggal-bwavard	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	*	44.1953	30.1465	82.7653	67.2461	1728	4004	1700	354	318	89.8305
gduggal-bwavard	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	het	85.6607	94.4974	78.3354	70.0293	1288	75	1280	354	318	89.8305
gduggal-bwaplat	INDEL	D6_15	HG002complexvar	homalt	88.8329	83.9179	94.3595	65.4443	981	188	987	59	53	89.8305
jli-custom	INDEL	D6_15	HG002complexvar	*	98.1282	97.3972	98.8702	56.5015	5164	138	5163	59	53	89.8305
dgrover-gatk	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.6403	99.3747	97.9167	72.3397	5562	35	5546	118	106	89.8305
rpoplin-dv42	SNP	ti	*	homalt	99.9800	99.9747	99.9853	16.8487	802835	203	802832	118	106	89.8305
ciseli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	27.8146	34.4262	23.3333	82.2835	21	40	21	69	62	89.8551
ckim-vqsr	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.9460	98.5791	99.3156	73.7970	93107	1342	93014	641	576	89.8596
jpowers-varprowl	INDEL	I1_5	HG002compoundhet	homalt	36.7720	93.9210	22.8614	60.8545	309	20	310	1046	940	89.8662
gduggal-snapvard	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	74.0214	58.9765	99.3707	59.0788	2086	1451	12474	79	71	89.8734
gduggal-snapfb	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	homalt	44.7458	92.9577	29.4643	46.0241	66	5	66	158	142	89.8734
hfeng-pmm1	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	97.3392	96.1587	98.5491	67.9366	5382	215	5366	79	71	89.8734
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	94.7613	94.2669	95.2609	72.9999	2006	122	1990	99	89	89.8990
anovak-vg	SNP	ti	HG002complexvar	homalt	98.2762	97.3918	99.1768	17.9619	188418	5046	185045	1536	1381	89.9089
anovak-vg	INDEL	I1_5	map_l150_m1_e0	homalt	69.0375	93.9394	54.5714	85.0810	186	12	191	159	143	89.9371
ckim-isaac	INDEL	*	HG002compoundhet	*	82.5676	79.0154	86.4543	46.0363	23673	6287	22964	3598	3236	89.9389
gduggal-snapvard	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	66.7149	82.5790	55.9638	44.4510	1332	281	5818	4578	4118	89.9519
gduggal-snapvard	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	57.2013	57.5771	56.8303	44.8249	3978	2931	6053	4598	4136	89.9522
gduggal-snapvard	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	27.3019	16.0247	92.1569	56.7063	104	545	235	20	18	90.0000
gduggal-snapvard	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	14.9034	8.1164	90.9910	51.3158	53	600	101	10	9	90.0000
gduggal-snapplat	SNP	*	map_l125_m1_e0	homalt	94.1655	89.0269	99.9336	67.4179	15050	1855	15040	10	9	90.0000
gduggal-snapplat	SNP	*	map_l125_m2_e0	homalt	94.2904	89.2489	99.9355	69.8671	15507	1868	15497	10	9	90.0000
gduggal-snapplat	SNP	*	map_l125_m2_e1	homalt	94.3221	89.3053	99.9361	69.8871	15657	1875	15646	10	9	90.0000
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	55.8190	40.4348	90.0990	79.0021	93	137	91	10	9	90.0000
ghariani-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	85.8841	77.2727	96.6555	54.2813	289	85	289	10	9	90.0000
ghariani-varprowl	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_51to200	*	19.3103	11.2903	66.6667	90.9366	21	165	20	10	9	90.0000
gduggal-snapfb	INDEL	D6_15	map_l100_m1_e0	*	77.1252	65.1163	94.5652	81.3576	168	90	174	10	9	90.0000
gduggal-snapfb	INDEL	D6_15	map_l100_m2_e0	*	76.6354	64.3939	94.6237	81.8182	170	94	176	10	9	90.0000
gduggal-snapfb	INDEL	D6_15	map_l100_m2_e1	*	75.6012	62.9091	94.7090	81.7919	173	102	179	10	9	90.0000
gduggal-snapfb	INDEL	D6_15	map_siren	het	84.5335	75.3571	96.2547	69.0972	211	69	257	10	9	90.0000

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