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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1461 1462 1463 1464 1465 1466 1467 1468 1469 ... 1720 1721 » 73201-73250 / 86044 show all
asubramanian-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	97.3409	95.9881	98.7323	65.6784	15432	645	17602	226	202	89.3805
gduggal-bwafb	INDEL	D1_5	HG002compoundhet	*	91.0728	88.7045	93.5709	64.7882	10853	1382	11658	801	716	89.3883
ndellapenna-hhga	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	79.8661	82.5564	77.3455	75.6274	549	116	676	198	177	89.3939
ciseli-custom	INDEL	D1_5	segdup	homalt	89.2779	95.5432	83.7838	94.1865	343	16	341	66	59	89.3939
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.3847	97.8381	98.9375	61.5106	30729	679	30729	330	295	89.3939
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.3847	97.8381	98.9375	61.5106	30729	679	30729	330	295	89.3939
jlack-gatk	INDEL	*	HG002compoundhet	het	87.1214	97.4108	78.7981	78.1044	3988	106	3750	1009	902	89.3954
ckim-isaac	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	80.2615	74.0424	87.6212	52.2423	4504	1579	4339	613	548	89.3964
ciseli-custom	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	homalt	45.6140	82.9787	31.4516	52.4904	39	8	39	85	76	89.4118
bgallagher-sentieon	INDEL	D1_5	HG002complexvar	*	99.6177	99.4956	99.7400	58.4446	32550	165	32605	85	76	89.4118
ckim-isaac	INDEL	*	HG002compoundhet	het	56.9247	80.6302	43.9912	64.9439	3301	793	2405	3062	2738	89.4187
gduggal-bwaplat	SNP	*	HG002complexvar	homalt	98.2316	96.5943	99.9253	21.0137	278746	9828	278424	208	186	89.4231
jpowers-varprowl	INDEL	*	HG002compoundhet	homalt	33.5403	91.1079	20.5534	62.6200	625	61	624	2412	2157	89.4279
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	98.3258	97.0402	99.6459	43.8344	10754	328	10693	38	34	89.4737
ltrigg-rtg2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	98.3014	97.1593	99.4708	45.1343	14365	420	14284	76	68	89.4737
gduggal-bwaplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	83.3027	71.9181	98.9696	44.4076	1826	713	1825	19	17	89.4737
gduggal-bwaplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	85.7805	75.7534	98.8670	41.8516	1659	531	1658	19	17	89.4737
cchapple-custom	SNP	ti	*	homalt	99.9468	99.8984	99.9953	15.1867	802222	816	801552	38	34	89.4737
cchapple-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	95.0943	97.2973	92.9889	49.2509	252	7	252	19	17	89.4737
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	97.6384	95.7207	99.6345	39.6588	1275	57	5180	19	17	89.4737
ndellapenna-hhga	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	het	83.3504	84.7561	81.9905	78.4033	139	25	173	38	34	89.4737
ndellapenna-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	het	79.3320	92.4675	69.4643	60.8392	356	29	389	171	153	89.4737
mlin-fermikit	INDEL	I6_15	map_siren	het	82.8019	79.7203	86.1314	81.4363	114	29	118	19	17	89.4737
raldana-dualsentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	93.5030	90.1484	97.1168	71.5703	668	73	640	19	17	89.4737
raldana-dualsentieon	INDEL	I16_PLUS	*	*	96.7701	95.1388	98.4583	67.0904	6067	310	6067	95	85	89.4737
asubramanian-gatk	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	92.6261	95.2133	90.1758	75.1797	915	46	872	95	85	89.4737
anovak-vg	INDEL	*	map_l150_m1_e0	homalt	76.1726	83.7662	69.8413	86.9894	387	75	396	171	153	89.4737
asubramanian-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	*	95.7178	94.6429	96.8174	68.4294	583	33	578	19	17	89.4737
cchapple-custom	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8050	99.7787	99.8314	54.7146	11271	25	11248	19	17	89.4737
jlack-gatk	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	89.0056	80.5701	99.4139	40.3057	3081	743	3223	19	17	89.4737
jli-custom	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	95.6451	94.1259	97.2141	69.2007	2003	125	1989	57	51	89.4737
ckim-vqsr	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	96.2919	94.3909	98.2712	79.8126	1077	64	1080	19	17	89.4737
ckim-vqsr	SNP	ti	HG002compoundhet	*	98.9109	97.9517	99.8891	36.4634	17120	358	17120	19	17	89.4737
dgrover-gatk	SNP	ti	map_siren	homalt	99.8204	99.6914	99.9498	49.0891	37799	117	37793	19	17	89.4737
ckim-isaac	INDEL	D16_PLUS	HG002compoundhet	hetalt	86.1574	76.3485	98.8582	24.5694	1472	456	1645	19	17	89.4737
gduggal-snapfb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	59.1474	45.9330	83.0357	59.5668	96	113	93	19	17	89.4737
gduggal-snapfb	INDEL	D6_15	map_siren	*	82.8291	73.2809	95.2381	76.5845	373	136	380	19	17	89.4737
ghariani-varprowl	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	62.9334	53.3333	76.7483	71.4713	440	385	439	133	119	89.4737
ghariani-varprowl	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	62.9334	53.3333	76.7483	71.4713	440	385	439	133	119	89.4737
cchapple-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	97.1590	96.0055	98.3406	45.9292	36388	1514	49009	827	740	89.4800
jli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	98.0520	97.3439	98.7704	57.5661	42184	1151	42011	523	468	89.4837
eyeh-varpipe	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	homalt	44.3448	92.6829	29.1447	34.4863	456	36	552	1342	1201	89.4933
ciseli-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	51.8014	43.6913	63.6086	59.7043	419	540	416	238	213	89.4958
qzeng-custom	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	93.4462	95.8525	91.1578	42.6611	1872	81	1866	181	162	89.5028
hfeng-pmm3	INDEL	D6_15	*	*	98.0738	96.8879	99.2891	51.0206	25280	812	25279	181	162	89.5028
anovak-vg	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	68.9415	78.6340	61.3762	40.0333	449	122	1106	696	623	89.5115
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.8574	99.1901	98.5270	64.5573	8328	68	8294	124	111	89.5161
mlin-fermikit	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	86.7858	90.4797	83.3817	76.0514	1226	129	1149	229	205	89.5197
jlack-gatk	INDEL	D6_15	HG002compoundhet	het	80.7008	96.6121	69.2893	65.6695	827	29	819	363	325	89.5317
bgallagher-sentieon	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	het	98.8361	99.3147	98.3621	62.3698	15652	108	15494	258	231	89.5349

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