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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
73151-73200 / 86044 show all
anovak-vgSNP*map_l100_m0_e0homalt
87.9850
78.9931
99.2870
62.5031
9179244190526558
89.2308
jpowers-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
40.4624
33.1754
51.8519
75.6757
70141706558
89.2308
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.3503
99.2642
99.4366
68.8610
1146785114726558
89.2308
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.3503
99.2642
99.4366
68.8610
1146785114726558
89.2308
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.7047
98.0586
97.3534
62.7778
82331638203223199
89.2377
mlin-fermikitSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.9682
99.6336
96.3576
67.1524
100603710079381340
89.2388
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
75.3208
65.0467
89.4493
64.1933
208811222128251224
89.2430
eyeh-varpipeINDEL*map_l100_m2_e0homalt
95.0097
96.1935
93.8547
84.5593
1213481848121108
89.2562
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
51.7959
37.2013
85.2349
63.2016
140123651397242216
89.2562
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
51.7959
37.2013
85.2349
63.2016
140123651397242216
89.2562
egarrison-hhgaINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
80.4994
78.7352
82.3445
83.8017
79312142803617231538
89.2629
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
93.3436
96.3164
90.5489
40.3596
71122726879718641
89.2758
ciseli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
70.2572
87.5000
58.6914
56.3300
73151045726651144566
89.2843
ciseli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
70.2572
87.5000
58.6914
56.3300
73151045726651144566
89.2843
ckim-dragenSNP*map_l150_m1_e0homalt
99.4842
99.2194
99.7504
65.7675
1118588111902825
89.2857
ckim-dragenSNP*map_l150_m2_e0homalt
99.4944
99.2307
99.7595
68.4345
1160990116142825
89.2857
ckim-dragenSNP*map_l150_m2_e1homalt
99.4914
99.2221
99.7621
68.4589
1173592117402825
89.2857
cchapple-customINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
97.8094
96.1793
99.4957
50.2286
551321955242825
89.2857
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
51.9644
35.2064
99.1674
46.2264
3352616933352825
89.2857
gduggal-bwaplatINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
87.1382
78.3947
98.0769
64.9494
285278628565650
89.2857
mlin-fermikitINDELI1_5map_l150_m1_e0*
61.2987
46.6403
89.3939
82.1138
2362702362825
89.2857
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
95.4396
91.6508
99.5551
24.5986
625757062652825
89.2857
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
94.2768
89.5307
99.5544
31.1699
123231441125115650
89.2857
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
94.2610
89.4954
99.5627
34.0219
125581474127515650
89.2857
anovak-vgSNP*map_l150_m0_e0homalt
84.1702
73.1719
99.0595
77.5693
2992109729492825
89.2857
anovak-vgSNPtimap_sirenhomalt
94.0329
89.3343
99.2531
48.3941
33872404433489252225
89.2857
astatham-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
96.7778
99.6205
94.0928
82.7887
52524462825
89.2857
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
85.3685
84.7087
86.0387
70.3107
2710048922762144824002
89.2905
gduggal-bwavardINDELD1_5lowcmp_SimpleRepeat_triTR_11to50het
88.1251
98.2495
79.8925
44.0994
2245402229561501
89.3048
anovak-vgINDEL*map_l150_m2_e1homalt
76.1446
84.3496
69.3944
88.0547
41577424187167
89.3048
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
93.1339
90.7869
95.6056
36.5855
1006110219986459410
89.3246
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
79.1116
70.1992
90.6162
65.8002
285512122897300268
89.3333
ndellapenna-hhgaSNP*HG002complexvarhomalt
99.8626
99.8292
99.8960
19.9404
288081493288110300268
89.3333
gduggal-bwavardINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
82.7813
80.4513
85.2502
40.8125
32807973254563503
89.3428
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.8871
99.2258
98.5507
63.9239
8331658296122109
89.3443
mlin-fermikitSNPtimap_l125_m0_e0*
52.3097
37.7919
84.9392
57.8951
482379394822855764
89.3567
ndellapenna-hhgaINDELI6_15HG002compoundhethetalt
95.3870
91.6833
99.4026
27.8852
782771078204742
89.3617
egarrison-hhgaINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200het
79.2028
81.7073
76.8473
78.8981
134301564742
89.3617
egarrison-hhgaINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200het
80.9329
94.5455
70.7469
64.8688
31218341141126
89.3617
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.4797
95.7302
99.2944
52.9989
661429566144742
89.3617
eyeh-varpipeINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
0.0000
70.6250
95.1427
001134742
89.3617
eyeh-varpipeINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.0000
70.6250
95.1427
001134742
89.3617
asubramanian-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
97.7079
97.3724
98.0457
60.9578
12973523584742
89.3617
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
94.4767
93.8476
95.1143
74.6842
204413418309484
89.3617
jmaeng-gatkINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
97.6596
99.0406
96.3166
82.8425
13421312294742
89.3617
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.5651
93.9933
99.2815
52.4049
649441564944742
89.3617
jli-customINDELI16_PLUSHG002compoundhet*
95.4155
93.2338
97.7017
49.8529
199814519984742
89.3617
gduggal-snapfbINDELD6_15HG002complexvarhet
75.2635
62.8205
93.8532
43.4007
196011602443160143
89.3750
hfeng-pmm2INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.0378
96.8281
99.2780
56.6258
1553850915539113101
89.3805
asubramanian-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.3409
95.9881
98.7323
65.6784
1543264517602226202
89.3805