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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1459 1460 1461 1462 1463 1464 1465 1466 1467 ... 1720 1721 » 73101-73150 / 86044 show all
dgrover-gatk	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	94.9925	94.4604	95.5306	69.2327	9515	558	9362	438	390	89.0411
gduggal-bwafb	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	93.9002	90.2088	97.9065	45.7445	3326	361	3414	73	65	89.0411
jlack-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	94.5847	98.2941	91.1451	66.4714	3803	66	3757	365	325	89.0411
ndellapenna-hhga	SNP	ti	HG002complexvar	homalt	99.8705	99.8403	99.9007	18.4130	193154	309	193175	192	171	89.0625
jpowers-varprowl	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	83.7845	74.5493	95.6314	65.9144	1406	480	1401	64	57	89.0625
gduggal-bwafb	INDEL	I1_5	HG002complexvar	*	97.5502	96.2593	98.8762	54.2720	32115	1248	32201	366	326	89.0710
egarrison-hhga	INDEL	D16_PLUS	*	het	92.0708	92.9408	91.2170	67.2524	2936	223	3043	293	261	89.0785
anovak-vg	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	81.0388	91.2786	72.8646	69.9021	1235	118	1254	467	416	89.0792
hfeng-pmm1	INDEL	D6_15	*	*	98.1898	97.0872	99.3178	50.8773	25332	760	25331	174	155	89.0805
ckim-isaac	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	94.4844	97.2451	91.8762	38.9766	6495	184	6322	559	498	89.0877
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	97.1645	97.0494	97.2799	70.1462	3947	120	3934	110	98	89.0909
egarrison-hhga	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	*	79.2866	71.4286	89.0873	67.9389	440	176	449	55	49	89.0909
hfeng-pmm1	INDEL	I1_5	HG002compoundhet	het	90.1398	87.7647	92.6471	86.3079	746	104	693	55	49	89.0909
jli-custom	INDEL	*	HG002compoundhet	het	95.0677	97.0689	93.1473	77.2493	3974	120	3738	275	245	89.0909
jli-custom	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	94.3143	94.5890	94.0412	72.3901	909	52	868	55	49	89.0909
ckim-dragen	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	*	97.2111	96.5725	97.8583	68.9818	2564	91	2513	55	49	89.0909
anovak-vg	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	*	30.6011	28.0000	33.7349	46.7949	21	54	28	55	49	89.0909
qzeng-custom	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	*	41.5478	32.1377	58.7500	48.1865	224	473	235	165	147	89.0909
mlin-fermikit	SNP	tv	map_l250_m2_e0	*	45.2311	31.9223	77.5717	80.1107	920	1962	920	266	237	89.0977
gduggal-snapplat	INDEL	D1_5	HG002compoundhet	homalt	26.1575	72.5086	15.9570	58.0098	211	80	371	1954	1741	89.0993
gduggal-snapplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	59.2422	42.8650	95.8708	51.4971	2331	3107	2345	101	90	89.1089
hfeng-pmm3	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	*	98.1954	96.9884	99.4328	50.3319	35490	1102	35413	202	180	89.1089
gduggal-bwafb	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	94.8782	93.0607	96.7682	51.4476	20706	1544	21469	717	639	89.1213
gduggal-bwavard	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	*	74.0664	64.1905	87.5339	61.2598	674	376	646	92	82	89.1304
gduggal-bwavard	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	89.1082	96.8085	82.5427	65.8679	455	15	435	92	82	89.1304
hfeng-pmm2	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	*	98.2164	97.1032	99.3555	50.5488	35532	1060	35455	230	205	89.1304
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	96.8560	94.5289	99.3006	52.1150	6531	378	6531	46	41	89.1304
ndellapenna-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	92.9959	91.7476	94.2786	67.1300	756	68	758	46	41	89.1304
rpoplin-dv42	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	97.4118	97.6791	97.1460	75.4876	6271	149	6263	184	164	89.1304
rpoplin-dv42	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	97.4118	97.6791	97.1460	75.4876	6271	149	6263	184	164	89.1304
anovak-vg	SNP	*	func_cds	homalt	99.1150	98.8967	99.3342	20.4124	6902	77	6863	46	41	89.1304
asubramanian-gatk	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	94.0814	91.6918	96.5990	62.3710	3653	331	3664	129	115	89.1473
hfeng-pmm3	INDEL	D6_15	*	het	98.2130	97.5673	98.8673	58.6531	11310	282	11260	129	115	89.1473
mlin-fermikit	SNP	tv	map_l100_m0_e0	*	58.6013	45.6875	81.6920	55.0247	5064	6020	5060	1134	1011	89.1534
rpoplin-dv42	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	96.7863	96.9500	96.6233	75.9515	2384	75	2375	83	74	89.1566
gduggal-snapvard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	53.8464	67.1975	44.9213	37.7402	633	309	2198	2695	2403	89.1651
gduggal-snapvard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	43.0132	41.0316	45.1960	37.9193	1599	2298	2225	2698	2406	89.1772
ndellapenna-hhga	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	72.9555	67.4217	79.4788	54.5797	2649	1280	2684	693	618	89.1775
mlin-fermikit	SNP	tv	map_l250_m2_e1	*	45.6242	32.2702	77.8329	80.3319	941	1975	941	268	239	89.1791
cchapple-custom	INDEL	I6_15	*	*	97.7435	96.8215	98.6833	49.3635	24034	789	25632	342	305	89.1813
ckim-dragen	SNP	*	map_l100_m2_e0	homalt	99.6377	99.4114	99.8650	58.3933	27361	162	27366	37	33	89.1892
ckim-dragen	SNP	*	map_l100_m2_e1	homalt	99.6376	99.4100	99.8663	58.3837	27632	164	27637	37	33	89.1892
gduggal-snapvard	INDEL	D1_5	func_cds	*	87.5742	91.8239	83.7004	42.8212	146	13	190	37	33	89.1892
gduggal-snapvard	INDEL	D1_5	func_cds	het	87.2852	100.0000	77.4390	47.4359	85	0	127	37	33	89.1892
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	*	97.7927	97.6562	97.9295	69.6398	1750	42	1750	37	33	89.1892
mlin-fermikit	INDEL	D16_PLUS	HG002complexvar	*	88.7656	86.9142	90.6977	68.5511	1428	215	1443	148	132	89.1892
mlin-fermikit	INDEL	*	map_siren	homalt	84.6161	81.5066	87.9724	79.3852	2164	491	2165	296	264	89.1892
egarrison-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	63.3593	46.6406	98.7609	37.5052	3346	3828	2949	37	33	89.1892
jmaeng-gatk	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	het	98.6853	98.9657	98.4065	63.1662	15597	163	15439	250	223	89.2000
egarrison-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	78.5618	72.3842	85.8922	52.6470	10702	4083	10825	1778	1586	89.2013

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