PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
72951-73000 / 86044 show all | |||||||||||||||
| astatham-gatk | SNP | ti | map_l100_m0_e0 | homalt | 99.3534 | 98.8294 | 99.8830 | 59.4667 | 7683 | 91 | 7683 | 9 | 8 | 88.8889 | |
| astatham-gatk | SNP | ti | map_l150_m1_e0 | homalt | 99.3483 | 98.8263 | 99.8759 | 68.2477 | 7241 | 86 | 7241 | 9 | 8 | 88.8889 | |
| astatham-gatk | SNP | ti | map_l150_m2_e0 | homalt | 99.3599 | 98.8445 | 99.8806 | 70.6148 | 7528 | 88 | 7528 | 9 | 8 | 88.8889 | |
| astatham-gatk | SNP | ti | map_l150_m2_e1 | homalt | 99.3663 | 98.8561 | 99.8818 | 70.6476 | 7605 | 88 | 7605 | 9 | 8 | 88.8889 | |
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.1605 | 98.5173 | 99.8122 | 66.6528 | 4784 | 72 | 4784 | 9 | 8 | 88.8889 | |
| anovak-vg | INDEL | * | map_l150_m2_e0 | homalt | 76.2649 | 84.1996 | 69.6970 | 88.0938 | 405 | 76 | 414 | 180 | 160 | 88.8889 | |
| anovak-vg | INDEL | I16_PLUS | map_siren | * | 33.6000 | 24.4186 | 53.8462 | 69.2913 | 21 | 65 | 21 | 18 | 16 | 88.8889 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.9118 | 99.3147 | 98.5122 | 62.5969 | 15652 | 108 | 15494 | 234 | 208 | 88.8889 | |
| astatham-gatk | INDEL | * | segdup | homalt | 99.4292 | 99.7917 | 99.0693 | 93.6623 | 958 | 2 | 958 | 9 | 8 | 88.8889 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.2194 | 86.3886 | 98.8943 | 32.6995 | 1574 | 248 | 1610 | 18 | 16 | 88.8889 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.5279 | 94.3253 | 98.8357 | 24.3640 | 748 | 45 | 764 | 9 | 8 | 88.8889 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 87.3239 | 100.0000 | 77.5000 | 85.2941 | 23 | 0 | 31 | 9 | 8 | 88.8889 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.6448 | 88.6228 | 97.0492 | 64.9425 | 888 | 114 | 888 | 27 | 24 | 88.8889 | |
| bgallagher-sentieon | SNP | ti | map_siren | homalt | 99.8535 | 99.7547 | 99.9524 | 48.7705 | 37823 | 93 | 37817 | 18 | 16 | 88.8889 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.2539 | 96.1437 | 98.3900 | 80.1773 | 1097 | 44 | 1100 | 18 | 16 | 88.8889 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 87.1803 | 85.0575 | 89.4118 | 82.8629 | 74 | 13 | 76 | 9 | 8 | 88.8889 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m2_e1 | * | 67.1787 | 55.2699 | 85.6287 | 82.9069 | 430 | 348 | 429 | 72 | 64 | 88.8889 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 68.4814 | 53.3724 | 95.5224 | 60.9709 | 182 | 159 | 192 | 9 | 8 | 88.8889 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 69.0769 | 53.9474 | 96.0000 | 65.2241 | 205 | 175 | 216 | 9 | 8 | 88.8889 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 62.9921 | 66.6667 | 59.7015 | 56.2092 | 6 | 3 | 40 | 27 | 24 | 88.8889 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.4970 | 99.5995 | 99.3948 | 81.7770 | 1492 | 6 | 1478 | 9 | 8 | 88.8889 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 74.4043 | 72.9730 | 75.8929 | 83.4686 | 162 | 60 | 170 | 54 | 48 | 88.8889 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 93.5800 | 96.8468 | 90.5263 | 70.9302 | 430 | 14 | 430 | 45 | 40 | 88.8889 | |
| raldana-dualsentieon | SNP | * | HG002compoundhet | homalt | 99.8887 | 99.8609 | 99.9165 | 34.8192 | 10767 | 15 | 10768 | 9 | 8 | 88.8889 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.8260 | 99.7054 | 99.9469 | 65.8244 | 16925 | 50 | 16925 | 9 | 8 | 88.8889 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.8260 | 99.7054 | 99.9469 | 65.8244 | 16925 | 50 | 16925 | 9 | 8 | 88.8889 | |
| raldana-dualsentieon | SNP | ti | map_l125_m1_e0 | homalt | 99.7597 | 99.6016 | 99.9183 | 62.2389 | 11001 | 44 | 11001 | 9 | 8 | 88.8889 | |
| raldana-dualsentieon | SNP | ti | map_l125_m2_e0 | homalt | 99.7663 | 99.6126 | 99.9205 | 64.9616 | 11314 | 44 | 11314 | 9 | 8 | 88.8889 | |
| raldana-dualsentieon | SNP | ti | map_l125_m2_e1 | homalt | 99.7684 | 99.6160 | 99.9212 | 64.9891 | 11414 | 44 | 11414 | 9 | 8 | 88.8889 | |
| rpoplin-dv42 | INDEL | D1_5 | * | homalt | 99.7606 | 99.6505 | 99.8710 | 59.0122 | 48755 | 171 | 48760 | 63 | 56 | 88.8889 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.8033 | 98.0989 | 99.5179 | 50.4556 | 5573 | 108 | 5573 | 27 | 24 | 88.8889 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.8405 | 98.7254 | 98.9559 | 62.6030 | 852 | 11 | 853 | 9 | 8 | 88.8889 | |
| rpoplin-dv42 | INDEL | I1_5 | HG002complexvar | het | 99.3340 | 99.1643 | 99.5043 | 57.7801 | 18037 | 152 | 18065 | 90 | 80 | 88.8889 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 90.0000 | 85.9551 | 94.4444 | 70.7581 | 153 | 25 | 153 | 9 | 8 | 88.8889 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.9493 | 99.5404 | 98.3651 | 65.9133 | 1083 | 5 | 1083 | 18 | 16 | 88.8889 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.0223 | 95.7317 | 92.3729 | 85.3598 | 157 | 7 | 109 | 9 | 8 | 88.8889 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.0404 | 92.7273 | 97.4719 | 75.5662 | 357 | 28 | 347 | 9 | 8 | 88.8889 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.7099 | 100.0000 | 95.5224 | 44.4751 | 192 | 0 | 192 | 9 | 8 | 88.8889 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 98.3459 | 97.0855 | 99.6394 | 45.0946 | 2465 | 74 | 2487 | 9 | 8 | 88.8889 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 98.2763 | 96.9365 | 99.6537 | 46.3792 | 2563 | 81 | 2590 | 9 | 8 | 88.8889 | |
| ltrigg-rtg2 | SNP | * | map_l100_m2_e0 | homalt | 99.8108 | 99.6875 | 99.9344 | 60.3899 | 27437 | 86 | 27435 | 18 | 16 | 88.8889 | |
| ltrigg-rtg2 | SNP | * | map_l100_m2_e1 | homalt | 99.8127 | 99.6906 | 99.9351 | 60.3846 | 27710 | 86 | 27708 | 18 | 16 | 88.8889 | |
| mlin-fermikit | INDEL | * | map_l150_m1_e0 | homalt | 67.2189 | 61.4719 | 74.1514 | 83.0230 | 284 | 178 | 284 | 99 | 88 | 88.8889 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 76.6168 | 62.5327 | 98.8894 | 32.4892 | 4306 | 2580 | 4007 | 45 | 40 | 88.8889 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 81.5245 | 69.8462 | 97.8923 | 31.4607 | 454 | 196 | 418 | 9 | 8 | 88.8889 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 94.0865 | 90.1750 | 98.3527 | 42.9913 | 1597 | 174 | 1612 | 27 | 24 | 88.8889 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 54.0093 | 51.1111 | 57.2559 | 47.5069 | 69 | 66 | 217 | 162 | 144 | 88.8889 | |
| qzeng-custom | INDEL | D1_5 | map_l250_m1_e0 | het | 80.5398 | 72.0721 | 91.2621 | 98.1252 | 80 | 31 | 94 | 9 | 8 | 88.8889 | |
| egarrison-hhga | INDEL | D1_5 | * | hetalt | 77.5745 | 63.8360 | 98.8480 | 70.3665 | 6540 | 3705 | 6178 | 72 | 64 | 88.8889 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 77.4165 | 63.6080 | 98.8826 | 71.6925 | 5913 | 3383 | 5575 | 63 | 56 | 88.8889 | |