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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1436 1437 1438 1439 1440 1441 1442 1443 1444 ... 1720 1721 » 71951-72000 / 86044 show all
anovak-vg	INDEL	D1_5	map_l150_m2_e0	homalt	85.5172	76.8595	96.3731	89.4304	186	56	186	7	6	85.7143
anovak-vg	INDEL	D1_5	map_l150_m2_e1	homalt	85.6502	77.0161	96.4646	89.3777	191	57	191	7	6	85.7143
anovak-vg	INDEL	D6_15	map_l100_m0_e0	*	75.4516	68.9320	83.3333	89.1892	71	32	70	14	12	85.7143
anovak-vg	INDEL	I16_PLUS	map_l100_m1_e0	*	21.6216	15.3846	36.3636	80.0000	4	22	4	7	6	85.7143
anovak-vg	INDEL	I16_PLUS	map_l100_m1_e0	homalt	34.2857	40.0000	30.0000	77.2727	2	3	3	7	6	85.7143
bgallagher-sentieon	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	94.5736	100.0000	89.7059	91.5633	61	0	61	7	6	85.7143
bgallagher-sentieon	INDEL	I6_15	HG002complexvar	het	99.2727	98.8535	99.6955	59.4318	2328	27	2292	7	6	85.7143
bgallagher-sentieon	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	96.4850	94.3803	98.6856	56.4231	3678	219	3679	49	42	85.7143
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	99.3822	99.3056	99.4590	87.2487	1287	9	1287	7	6	85.7143
bgallagher-sentieon	SNP	ti	map_l100_m1_e0	homalt	99.7937	99.6659	99.9218	56.9365	17900	60	17900	14	12	85.7143
bgallagher-sentieon	SNP	ti	map_l100_m2_e0	homalt	99.7949	99.6668	99.9233	59.4718	18248	61	18248	14	12	85.7143
bgallagher-sentieon	SNP	ti	map_l100_m2_e1	homalt	99.7943	99.6648	99.9241	59.4504	18432	62	18432	14	12	85.7143
bgallagher-sentieon	SNP	tv	HG002compoundhet	homalt	99.8524	99.9115	99.7933	42.7775	3385	3	3380	7	6	85.7143
bgallagher-sentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.2885	99.3428	99.2341	89.3299	907	6	907	7	6	85.7143
astatham-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	97.5501	95.9474	99.2072	89.6154	876	37	876	7	6	85.7143
asubramanian-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	94.0947	93.5620	94.6334	73.4309	1991	137	1975	112	96	85.7143
asubramanian-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	97.8022	98.1618	97.4453	67.6027	1068	20	1068	28	24	85.7143
astatham-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	96.1064	98.8722	93.4911	83.7545	1315	15	1106	77	66	85.7143
astatham-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	96.5536	96.0864	97.0255	75.2541	712	29	685	21	18	85.7143
astatham-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	*	98.2021	97.5649	98.8477	61.4163	1202	30	1201	14	12	85.7143
astatham-gatk	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	94.6399	91.5309	97.9675	67.1249	1686	156	1687	35	30	85.7143
anovak-vg	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	60.2265	64.3636	56.5891	50.4418	531	294	730	560	480	85.7143
anovak-vg	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	60.2265	64.3636	56.5891	50.4418	531	294	730	560	480	85.7143
anovak-vg	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_51to200	*	15.2866	9.6774	36.3636	52.5862	18	168	20	35	30	85.7143
ckim-isaac	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	95.1004	91.1765	99.3772	49.3237	1116	108	1117	7	6	85.7143
ckim-isaac	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	96.0776	92.7182	99.6894	66.0081	2241	176	2247	7	6	85.7143
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	*	98.0772	97.3214	98.8449	61.2532	1199	33	1198	14	12	85.7143
ckim-isaac	INDEL	D16_PLUS	HG002compoundhet	homalt	23.5294	25.0000	22.2222	66.6667	2	6	2	7	6	85.7143
ckim-isaac	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	90.9557	84.7716	98.1132	33.9074	1002	180	1092	21	18	85.7143
ckim-isaac	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	80.1664	67.4653	98.7589	27.5995	535	258	557	7	6	85.7143
ckim-isaac	INDEL	D6_15	segdup	*	90.5970	85.8639	95.8824	90.7053	164	27	163	7	6	85.7143
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.4755	99.3161	99.6354	69.3829	11473	79	11478	42	36	85.7143
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.4755	99.3161	99.6354	69.3829	11473	79	11478	42	36	85.7143
eyeh-varpipe	INDEL	C16_PLUS	HG002compoundhet	homalt		0.0000	0.0000	89.0625	0	0	0	7	6	85.7143
eyeh-varpipe	INDEL	C1_5	lowcmp_SimpleRepeat_triTR_11to50	*	92.1348	100.0000	85.4167	94.0959	1	0	41	7	6	85.7143
egarrison-hhga	INDEL	*	lowcmp_SimpleRepeat_homopolymer_gt10	homalt	80.8511	90.4762	73.0769	99.9443	19	2	19	7	6	85.7143
egarrison-hhga	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	81.6150	69.6868	98.4699	49.2653	1869	813	1802	28	24	85.7143
egarrison-hhga	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	*	82.5839	81.3183	83.8895	82.0997	2159	496	2187	420	360	85.7143
egarrison-hhga	INDEL	D16_PLUS	*	*	85.6324	79.0831	93.3644	63.5644	5365	1419	5417	385	330	85.7143
egarrison-hhga	INDEL	D16_PLUS	*	hetalt	60.0179	43.0419	99.1060	48.8235	832	1101	776	7	6	85.7143
egarrison-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	59.9599	42.9829	99.1026	48.8525	830	1101	773	7	6	85.7143
egarrison-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	59.9599	42.9829	99.1026	48.8525	830	1101	773	7	6	85.7143
egarrison-hhga	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	het	92.8218	95.0820	90.6667	66.3677	58	3	68	7	6	85.7143
egarrison-hhga	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	73.8603	58.8768	99.0735	33.2105	4812	3361	4491	42	36	85.7143
egarrison-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	81.3778	69.3846	98.3834	31.9182	451	199	426	7	6	85.7143
egarrison-hhga	INDEL	D6_15	HG002complexvar	hetalt	65.3629	50.0494	94.1788	58.1739	507	506	453	28	24	85.7143
egarrison-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	64.3918	47.8099	98.5834	40.4750	3853	4206	3410	49	42	85.7143
egarrison-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	64.3918	47.8099	98.5834	40.4750	3853	4206	3410	49	42	85.7143
egarrison-hhga	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	85.7593	76.8439	97.0149	63.3307	448	135	455	14	12	85.7143
egarrison-hhga	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	92.5832	87.5139	98.2759	42.2886	785	112	798	14	12	85.7143

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