PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
71801-71850 / 86044 show all | |||||||||||||||
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.6834 | 100.0000 | 97.4010 | 66.6941 | 786 | 0 | 787 | 21 | 18 | 85.7143 | |
| ndellapenna-hhga | INDEL | * | * | hetalt | 84.9841 | 74.5730 | 98.7738 | 62.9843 | 18820 | 6417 | 18044 | 224 | 192 | 85.7143 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 74.7342 | 66.9196 | 84.6154 | 62.9705 | 882 | 436 | 924 | 168 | 144 | 85.7143 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7349 | 99.8133 | 99.6566 | 54.0176 | 10159 | 19 | 10157 | 35 | 30 | 85.7143 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m1_e0 | homalt | 98.9030 | 98.9865 | 98.8196 | 81.4803 | 586 | 6 | 586 | 7 | 6 | 85.7143 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m2_e0 | homalt | 98.9370 | 99.0180 | 98.8562 | 82.4087 | 605 | 6 | 605 | 7 | 6 | 85.7143 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m2_e1 | homalt | 98.9525 | 99.0323 | 98.8728 | 82.5169 | 614 | 6 | 614 | 7 | 6 | 85.7143 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 64.0965 | 47.4352 | 98.7989 | 37.2929 | 3403 | 3771 | 2879 | 35 | 30 | 85.7143 | |
| ndellapenna-hhga | INDEL | D6_15 | segdup | het | 94.7959 | 96.7391 | 92.9293 | 94.1351 | 89 | 3 | 92 | 7 | 6 | 85.7143 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 93.0752 | 90.4494 | 95.8580 | 71.6918 | 161 | 17 | 162 | 7 | 6 | 85.7143 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 90.2022 | 93.2476 | 87.3494 | 68.7382 | 290 | 21 | 290 | 42 | 36 | 85.7143 | |
| ndellapenna-hhga | SNP | * | map_l125_m0_e0 | homalt | 99.5815 | 99.2700 | 99.8951 | 66.7961 | 6663 | 49 | 6663 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | SNP | ti | HG002compoundhet | * | 99.6565 | 99.5938 | 99.7193 | 35.2092 | 17407 | 71 | 17405 | 49 | 42 | 85.7143 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.1087 | 92.3483 | 98.0392 | 62.9283 | 350 | 29 | 350 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.3467 | 99.2253 | 99.4684 | 49.9176 | 11783 | 92 | 11787 | 63 | 54 | 85.7143 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.6420 | 97.5355 | 99.7738 | 49.4362 | 3087 | 78 | 3087 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 91.8367 | 87.8049 | 96.2567 | 84.7844 | 180 | 25 | 180 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 84.6154 | 95.6522 | 75.8621 | 82.5301 | 22 | 1 | 22 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 92.9134 | 96.7213 | 89.3939 | 84.5794 | 59 | 2 | 59 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 91.8367 | 87.8049 | 96.2567 | 84.7844 | 180 | 25 | 180 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 91.2661 | 86.8078 | 96.2071 | 67.4824 | 1599 | 243 | 1598 | 63 | 54 | 85.7143 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 85.9089 | 82.5503 | 89.5522 | 75.5027 | 123 | 26 | 120 | 14 | 12 | 85.7143 | |
| rpoplin-dv42 | INDEL | I6_15 | map_siren | * | 93.6968 | 90.1639 | 97.5177 | 81.7829 | 275 | 30 | 275 | 7 | 6 | 85.7143 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 86.7925 | 100.0000 | 76.6667 | 85.4369 | 23 | 0 | 23 | 7 | 6 | 85.7143 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 94.4884 | 91.0628 | 98.1818 | 71.3328 | 377 | 37 | 378 | 7 | 6 | 85.7143 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 94.5736 | 100.0000 | 89.7059 | 90.0439 | 61 | 0 | 61 | 7 | 6 | 85.7143 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 89.5949 | 92.3077 | 87.0370 | 80.0738 | 48 | 4 | 47 | 7 | 6 | 85.7143 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m0_e0 | * | 46.3768 | 34.7826 | 69.5652 | 93.9153 | 16 | 30 | 16 | 7 | 6 | 85.7143 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 57.4807 | 40.4480 | 99.2929 | 38.4711 | 957 | 1409 | 983 | 7 | 6 | 85.7143 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.9769 | 97.9769 | 97.9769 | 76.3823 | 339 | 7 | 339 | 7 | 6 | 85.7143 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m1_e0 | * | 71.1252 | 62.2642 | 82.9268 | 83.4677 | 33 | 20 | 34 | 7 | 6 | 85.7143 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m2_e0 | * | 71.1252 | 62.2642 | 82.9268 | 86.1017 | 33 | 20 | 34 | 7 | 6 | 85.7143 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m2_e1 | * | 71.1252 | 62.2642 | 82.9268 | 86.6013 | 33 | 20 | 34 | 7 | 6 | 85.7143 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7425 | 99.6656 | 99.8196 | 59.9732 | 3874 | 13 | 3874 | 7 | 6 | 85.7143 | |
| ndellapenna-hhga | SNP | tv | map_l125_m1_e0 | homalt | 99.7180 | 99.5563 | 99.8802 | 65.8321 | 5834 | 26 | 5834 | 7 | 6 | 85.7143 | |
| ndellapenna-hhga | SNP | tv | map_l125_m2_e0 | homalt | 99.7253 | 99.5679 | 99.8833 | 68.5442 | 5991 | 26 | 5991 | 7 | 6 | 85.7143 | |
| ndellapenna-hhga | SNP | tv | map_l125_m2_e1 | homalt | 99.7279 | 99.5719 | 99.8844 | 68.5879 | 6048 | 26 | 6048 | 7 | 6 | 85.7143 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 88.4879 | 79.8982 | 99.1469 | 44.6823 | 13347 | 3358 | 3254 | 28 | 24 | 85.7143 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 88.1620 | 79.3519 | 99.1726 | 31.2754 | 10922 | 2842 | 2517 | 21 | 18 | 85.7143 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 88.4879 | 79.8982 | 99.1469 | 44.6823 | 13347 | 3358 | 3254 | 28 | 24 | 85.7143 | |
| qzeng-custom | INDEL | I1_5 | segdup | homalt | 99.1688 | 99.7886 | 98.5567 | 91.3377 | 472 | 1 | 478 | 7 | 6 | 85.7143 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 85.9606 | 75.6948 | 99.4477 | 36.9246 | 2669 | 857 | 2521 | 14 | 12 | 85.7143 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 85.9606 | 75.6948 | 99.4477 | 36.9246 | 2669 | 857 | 2521 | 14 | 12 | 85.7143 | |
| qzeng-custom | SNP | ti | map_l150_m0_e0 | * | 73.3597 | 60.0560 | 94.2346 | 92.3897 | 4721 | 3140 | 4691 | 287 | 246 | 85.7143 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.9116 | 99.2110 | 98.6139 | 86.9408 | 503 | 4 | 498 | 7 | 6 | 85.7143 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 98.6633 | 97.6712 | 99.6756 | 43.8460 | 2139 | 51 | 2151 | 7 | 6 | 85.7143 | |
| ltrigg-rtg2 | SNP | * | HG002compoundhet | homalt | 99.4265 | 98.9241 | 99.9340 | 32.8863 | 10666 | 116 | 10603 | 7 | 6 | 85.7143 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 70.4102 | 58.6207 | 88.1356 | 99.8947 | 51 | 36 | 52 | 7 | 6 | 85.7143 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 57.4257 | 40.5021 | 98.6434 | 49.1124 | 484 | 711 | 509 | 7 | 6 | 85.7143 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.4731 | 87.4402 | 98.1208 | 65.4453 | 731 | 105 | 731 | 14 | 12 | 85.7143 | |