PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
71001-71050 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 72.3907 | 57.0056 | 99.1501 | 60.4038 | 712 | 537 | 700 | 6 | 5 | 83.3333 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 51.9508 | 35.3723 | 97.7778 | 57.1429 | 266 | 486 | 264 | 6 | 5 | 83.3333 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 90.1456 | 99.3056 | 82.5328 | 68.5151 | 572 | 4 | 567 | 120 | 100 | 83.3333 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 80.1822 | 76.1905 | 84.6154 | 73.4694 | 64 | 20 | 33 | 6 | 5 | 83.3333 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 78.6765 | 69.9346 | 89.9160 | 64.3713 | 107 | 46 | 107 | 12 | 10 | 83.3333 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.5025 | 96.2525 | 98.7854 | 87.2812 | 488 | 19 | 488 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 53.3333 | 50.0000 | 57.1429 | 89.8551 | 8 | 8 | 8 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 74.9597 | 62.1622 | 94.3925 | 87.7434 | 46 | 28 | 101 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 14.2857 | 68.1818 | 0 | 87 | 2 | 12 | 10 | 83.3333 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 25.0000 | 69.2308 | 0 | 26 | 2 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e0 | * | 97.1095 | 97.3451 | 96.8750 | 94.8855 | 110 | 3 | 186 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e1 | * | 97.1292 | 97.3684 | 96.8912 | 95.0078 | 111 | 3 | 187 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m1_e0 | het | 79.4144 | 72.8814 | 87.2340 | 74.7312 | 43 | 16 | 82 | 12 | 10 | 83.3333 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m2_e0 | het | 79.0220 | 72.1311 | 87.3684 | 76.1905 | 44 | 17 | 83 | 12 | 10 | 83.3333 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m2_e1 | het | 79.0220 | 72.1311 | 87.3684 | 76.4851 | 44 | 17 | 83 | 12 | 10 | 83.3333 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m1_e0 | * | 77.1296 | 68.0000 | 89.0909 | 85.2151 | 17 | 8 | 49 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m2_e0 | * | 77.4055 | 68.0000 | 89.8305 | 85.8852 | 17 | 8 | 53 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m2_e1 | * | 78.9185 | 70.3704 | 89.8305 | 86.2471 | 19 | 8 | 53 | 6 | 5 | 83.3333 | |
| gduggal-bwaplat | INDEL | D16_PLUS | HG002complexvar | homalt | 84.4618 | 76.1246 | 94.8498 | 71.9277 | 220 | 69 | 221 | 12 | 10 | 83.3333 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 86.6522 | 77.1817 | 98.7718 | 69.3057 | 964 | 285 | 965 | 12 | 10 | 83.3333 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 86.6522 | 77.1817 | 98.7718 | 69.3057 | 964 | 285 | 965 | 12 | 10 | 83.3333 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 72.8837 | 58.1081 | 97.7358 | 91.6876 | 258 | 186 | 259 | 6 | 5 | 83.3333 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 89.4671 | 81.5166 | 99.1361 | 72.5927 | 1376 | 312 | 1377 | 12 | 10 | 83.3333 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 78.1733 | 64.2951 | 99.6920 | 43.7482 | 3904 | 2168 | 3884 | 12 | 10 | 83.3333 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 59.9388 | 63.0225 | 57.1429 | 46.3295 | 196 | 115 | 376 | 282 | 235 | 83.3333 | |
| anovak-vg | INDEL | I6_15 | map_l100_m2_e0 | homalt | 63.9719 | 78.7879 | 53.8462 | 79.8450 | 26 | 7 | 28 | 24 | 20 | 83.3333 | |
| anovak-vg | INDEL | I6_15 | map_l100_m2_e1 | homalt | 63.9719 | 78.7879 | 53.8462 | 80.2281 | 26 | 7 | 28 | 24 | 20 | 83.3333 | |
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.1094 | 96.1467 | 98.0916 | 47.8953 | 1547 | 62 | 1542 | 30 | 25 | 83.3333 | |
| anovak-vg | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 56.0510 | 55.0000 | 57.1429 | 99.4951 | 11 | 9 | 8 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 53.3898 | 52.9412 | 53.8462 | 99.5165 | 9 | 8 | 7 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m1_e0 | * | 52.2205 | 37.9310 | 83.7838 | 88.2166 | 33 | 54 | 31 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m2_e0 | * | 52.2346 | 37.7778 | 84.6154 | 88.4956 | 34 | 56 | 33 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m2_e1 | * | 50.6599 | 36.0825 | 85.0000 | 88.3721 | 35 | 62 | 34 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | D1_5 | map_l125_m0_e0 | homalt | 82.9069 | 73.6486 | 94.8276 | 89.1386 | 109 | 39 | 110 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | D1_5 | map_l150_m1_e0 | homalt | 85.0123 | 75.8772 | 96.6480 | 88.9370 | 173 | 55 | 173 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | D6_15 | func_cds | * | 79.0123 | 74.4186 | 84.2105 | 49.3333 | 32 | 11 | 32 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | D6_15 | func_cds | het | 81.3559 | 82.7586 | 80.0000 | 46.4286 | 24 | 5 | 24 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 32.5234 | 37.5000 | 28.7129 | 27.3381 | 9 | 15 | 29 | 72 | 60 | 83.3333 | |
| anovak-vg | INDEL | D6_15 | map_l100_m0_e0 | het | 81.4578 | 81.6667 | 81.2500 | 89.3155 | 49 | 11 | 52 | 12 | 10 | 83.3333 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 93.0522 | 89.5197 | 96.8750 | 80.6207 | 615 | 72 | 744 | 24 | 20 | 83.3333 | |
| asubramanian-gatk | INDEL | I1_5 | HG002complexvar | * | 99.2344 | 98.6572 | 99.8183 | 57.3625 | 32915 | 448 | 32967 | 60 | 50 | 83.3333 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 90.9078 | 83.8350 | 99.2840 | 42.0470 | 752 | 145 | 832 | 6 | 5 | 83.3333 | |
| bgallagher-sentieon | INDEL | D16_PLUS | HG002complexvar | homalt | 98.6254 | 99.3080 | 97.9522 | 76.0621 | 287 | 2 | 287 | 6 | 5 | 83.3333 | |
| astatham-gatk | SNP | * | map_l250_m0_e0 | homalt | 97.9920 | 96.9793 | 99.0260 | 91.4528 | 610 | 19 | 610 | 6 | 5 | 83.3333 | |
| astatham-gatk | SNP | tv | HG002complexvar | homalt | 99.9458 | 99.9043 | 99.9874 | 22.8056 | 95020 | 91 | 95005 | 12 | 10 | 83.3333 | |
| astatham-gatk | SNP | tv | HG002compoundhet | homalt | 99.8376 | 99.8524 | 99.8227 | 42.7314 | 3383 | 5 | 3378 | 6 | 5 | 83.3333 | |
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 91.8050 | 86.0815 | 98.3438 | 38.2217 | 2344 | 379 | 2494 | 42 | 35 | 83.3333 | |
| asubramanian-gatk | INDEL | D16_PLUS | HG002complexvar | homalt | 97.7470 | 97.5779 | 97.9167 | 76.2963 | 282 | 7 | 282 | 6 | 5 | 83.3333 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.9774 | 95.2756 | 87.0504 | 53.0405 | 121 | 6 | 121 | 18 | 15 | 83.3333 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.9121 | 99.5122 | 94.4444 | 91.3008 | 204 | 1 | 204 | 12 | 10 | 83.3333 | |