PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
70701-70750 / 86044 show all | |||||||||||||||
| gduggal-snapvard | SNP | ti | map_l150_m2_e0 | homalt | 97.6054 | 95.6014 | 99.6952 | 73.2059 | 7281 | 335 | 7195 | 22 | 18 | 81.8182 | |
| gduggal-snapvard | SNP | ti | map_l150_m2_e1 | homalt | 97.6162 | 95.6194 | 99.6983 | 73.2617 | 7356 | 337 | 7269 | 22 | 18 | 81.8182 | |
| gduggal-snapplat | SNP | ti | map_siren | homalt | 97.6833 | 95.5270 | 99.9392 | 52.4384 | 36220 | 1696 | 36180 | 22 | 18 | 81.8182 | |
| ciseli-custom | SNP | ti | map_l150_m1_e0 | homalt | 86.8060 | 85.3282 | 88.3359 | 70.2453 | 6252 | 1075 | 6248 | 825 | 675 | 81.8182 | |
| ciseli-custom | INDEL | I1_5 | map_l100_m0_e0 | het | 63.7487 | 65.6442 | 61.9597 | 88.3791 | 214 | 112 | 215 | 132 | 108 | 81.8182 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 44.5054 | 31.6677 | 74.8476 | 75.2826 | 488 | 1053 | 491 | 165 | 135 | 81.8182 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.6908 | 99.5935 | 97.8044 | 62.6398 | 490 | 2 | 490 | 11 | 9 | 81.8182 | |
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.3403 | 97.9849 | 98.6982 | 87.4181 | 778 | 16 | 834 | 11 | 9 | 81.8182 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.7268 | 99.6801 | 99.7735 | 67.9777 | 9661 | 31 | 9691 | 22 | 18 | 81.8182 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.3823 | 95.0803 | 99.7986 | 57.9620 | 5450 | 282 | 5451 | 11 | 9 | 81.8182 | |
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.6925 | 99.7409 | 99.6441 | 69.2652 | 3080 | 8 | 3080 | 11 | 9 | 81.8182 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.1296 | 90.2834 | 98.3180 | 72.2646 | 669 | 72 | 643 | 11 | 9 | 81.8182 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.2932 | 93.7285 | 99.0021 | 51.9820 | 3273 | 219 | 3274 | 33 | 27 | 81.8182 | |
| jlack-gatk | SNP | ti | map_l125_m1_e0 | homalt | 99.2298 | 98.5695 | 99.8991 | 63.8084 | 10887 | 158 | 10887 | 11 | 9 | 81.8182 | |
| jlack-gatk | SNP | ti | map_l125_m2_e0 | homalt | 99.2423 | 98.5913 | 99.9019 | 66.3888 | 11198 | 160 | 11198 | 11 | 9 | 81.8182 | |
| jlack-gatk | SNP | ti | map_l125_m2_e1 | homalt | 99.2489 | 98.6036 | 99.9027 | 66.4043 | 11298 | 160 | 11298 | 11 | 9 | 81.8182 | |
| jli-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.3300 | 94.5545 | 96.1183 | 76.3193 | 3820 | 220 | 3541 | 143 | 117 | 81.8182 | |
| hfeng-pmm3 | INDEL | I1_5 | HG002compoundhet | het | 91.3786 | 87.6471 | 95.4420 | 86.4242 | 745 | 105 | 691 | 33 | 27 | 81.8182 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.9204 | 87.9187 | 98.5255 | 66.5471 | 735 | 101 | 735 | 11 | 9 | 81.8182 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.9497 | 96.6667 | 93.2927 | 74.5736 | 319 | 11 | 306 | 22 | 18 | 81.8182 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.6455 | 92.3077 | 95.0226 | 80.9154 | 228 | 19 | 210 | 11 | 9 | 81.8182 | |
| gduggal-bwavard | INDEL | I6_15 | HG002complexvar | homalt | 84.0374 | 73.1466 | 98.7385 | 35.6458 | 888 | 326 | 861 | 11 | 9 | 81.8182 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 93.0148 | 88.2142 | 98.3681 | 47.4010 | 5157 | 689 | 11935 | 198 | 162 | 81.8182 | |
| gduggal-bwavard | SNP | tv | map_l125_m1_e0 | homalt | 98.7755 | 97.7645 | 99.8076 | 66.5926 | 5729 | 131 | 5706 | 11 | 9 | 81.8182 | |
| gduggal-bwavard | SNP | tv | map_l125_m2_e0 | homalt | 98.7568 | 97.7231 | 99.8125 | 68.8568 | 5880 | 137 | 5857 | 11 | 9 | 81.8182 | |
| gduggal-bwavard | SNP | tv | map_l125_m2_e1 | homalt | 98.7179 | 97.6457 | 99.8140 | 68.9260 | 5931 | 143 | 5903 | 11 | 9 | 81.8182 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 93.0148 | 88.2142 | 98.3681 | 47.4010 | 5157 | 689 | 11935 | 198 | 162 | 81.8182 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 94.3814 | 92.1127 | 96.7647 | 63.8170 | 981 | 84 | 987 | 33 | 27 | 81.8182 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 69.3227 | 56.8627 | 88.7755 | 86.4454 | 87 | 66 | 87 | 11 | 9 | 81.8182 | |
| gduggal-bwaplat | SNP | * | map_siren | homalt | 86.1632 | 75.7053 | 99.9736 | 58.6738 | 41756 | 13400 | 41721 | 11 | 9 | 81.8182 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m2_e1 | homalt | 97.3013 | 98.5484 | 96.0854 | 85.4680 | 611 | 9 | 810 | 33 | 27 | 81.8182 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 15.3846 | 12.0000 | 21.4286 | 44.0000 | 3 | 22 | 3 | 11 | 9 | 81.8182 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m1_e0 | * | 76.9628 | 67.9245 | 88.7755 | 80.5169 | 36 | 17 | 87 | 11 | 9 | 81.8182 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m2_e0 | * | 77.1277 | 67.9245 | 89.2157 | 81.4208 | 36 | 17 | 91 | 11 | 9 | 81.8182 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m2_e1 | * | 77.1277 | 67.9245 | 89.2157 | 81.6876 | 36 | 17 | 91 | 11 | 9 | 81.8182 | |
| cchapple-custom | INDEL | D16_PLUS | * | * | 96.3496 | 95.5041 | 97.2102 | 62.8743 | 6479 | 305 | 6725 | 193 | 158 | 81.8653 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.8737 | 96.6718 | 99.1058 | 64.7457 | 63176 | 2175 | 62956 | 568 | 465 | 81.8662 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.8737 | 96.6718 | 99.1058 | 64.7457 | 63176 | 2175 | 62956 | 568 | 465 | 81.8662 | |
| gduggal-bwavard | INDEL | * | segdup | * | 89.7413 | 89.8670 | 89.6160 | 95.3552 | 2297 | 259 | 2287 | 265 | 217 | 81.8868 | |
| mlin-fermikit | INDEL | * | map_l125_m0_e0 | homalt | 64.5756 | 61.6197 | 67.8295 | 81.8820 | 175 | 109 | 175 | 83 | 68 | 81.9277 | |
| qzeng-custom | SNP | tv | map_l150_m2_e0 | het | 83.5782 | 74.2554 | 95.5781 | 89.7806 | 5385 | 1867 | 5382 | 249 | 204 | 81.9277 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 78.7482 | 91.5528 | 69.0859 | 44.8186 | 3349 | 309 | 5978 | 2675 | 2192 | 81.9439 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 96.2215 | 96.1718 | 96.2714 | 63.1699 | 1859 | 74 | 1859 | 72 | 59 | 81.9444 | |
| ciseli-custom | SNP | ti | map_l150_m2_e1 | homalt | 87.0667 | 85.6493 | 88.5319 | 72.6293 | 6589 | 1104 | 6585 | 853 | 699 | 81.9461 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 85.5433 | 76.2190 | 97.4669 | 52.9093 | 7894 | 2463 | 7888 | 205 | 168 | 81.9512 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 72.4560 | 79.2319 | 66.7478 | 27.2137 | 557 | 146 | 823 | 410 | 336 | 81.9512 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 57.0043 | 54.0284 | 60.3272 | 41.7857 | 114 | 97 | 295 | 194 | 159 | 81.9588 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.7783 | 97.2753 | 98.2865 | 69.9578 | 2392 | 67 | 3499 | 61 | 50 | 81.9672 | |
| ckim-isaac | INDEL | D6_15 | HG002compoundhet | hetalt | 90.9387 | 83.9774 | 99.1585 | 17.7185 | 6845 | 1306 | 7188 | 61 | 50 | 81.9672 | |
| gduggal-bwafb | SNP | * | HG002compoundhet | homalt | 99.2787 | 99.5826 | 98.9767 | 38.6655 | 10737 | 45 | 10736 | 111 | 91 | 81.9820 | |