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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1393 1394 1395 1396 1397 1398 1399 1400 1401 ... 1720 1721 » 69801-69850 / 86044 show all
anovak-vg	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	60.5878	57.3058	64.2686	55.8452	6581	4903	7763	4316	3401	78.7998
anovak-vg	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	60.7416	67.9902	54.8896	38.6127	2226	1048	3755	3086	2432	78.8075
jmaeng-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.2920	98.3891	98.1951	74.4975	29989	491	29542	543	428	78.8214
jmaeng-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.2920	98.3891	98.1951	74.4975	29989	491	29542	543	428	78.8214
egarrison-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	93.4915	90.6675	96.4971	60.4318	5732	590	5730	208	164	78.8462
egarrison-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	93.4915	90.6675	96.4971	60.4318	5732	590	5730	208	164	78.8462
gduggal-snapplat	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	24.7522	14.3959	88.2086	64.5213	392	2331	389	52	41	78.8462
ndellapenna-hhga	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.6018	99.6636	99.5400	55.7604	11258	38	11253	52	41	78.8462
ndellapenna-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	83.4101	90.0498	77.6824	80.0684	181	20	181	52	41	78.8462
qzeng-custom	SNP	tv	map_l100_m2_e1	*	88.3100	80.2832	98.1201	78.5916	20298	4985	20251	388	306	78.8660
anovak-vg	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	97.3849	98.2708	96.5148	54.3311	10002	176	9831	355	280	78.8732
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.1054	98.7352	99.4784	63.8767	13583	174	13541	71	56	78.8732
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.1054	98.7352	99.4784	63.8767	13583	174	13541	71	56	78.8732
ciseli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	39.8947	28.8609	64.5870	56.5465	1994	4915	1822	999	788	78.8789
dgrover-gatk	INDEL	I1_5	*	*	99.5294	99.3841	99.6753	59.0782	149736	928	149786	488	385	78.8934
qzeng-custom	SNP	ti	map_l250_m0_e0	*	67.6335	55.1825	87.3403	98.0910	756	614	752	109	86	78.8991
qzeng-custom	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	94.7408	91.6287	98.0717	68.7918	14273	1304	54062	1063	839	78.9276
qzeng-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	77.0774	70.4225	85.1214	55.3497	350	147	1087	190	150	78.9474
raldana-dualsentieon	SNP	*	map_l100_m1_e0	homalt	99.8258	99.7223	99.9295	56.9722	26928	75	26928	19	15	78.9474
raldana-dualsentieon	SNP	*	map_l100_m2_e0	homalt	99.8291	99.7275	99.9308	59.5568	27448	75	27448	19	15	78.9474
raldana-dualsentieon	SNP	*	map_l100_m2_e1	homalt	99.8307	99.7302	99.9315	59.5367	27721	75	27721	19	15	78.9474
ndellapenna-hhga	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	91.7051	92.1296	91.2844	63.1134	199	17	199	19	15	78.9474
ndellapenna-hhga	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	98.5750	98.2820	98.8697	60.9705	1659	29	1662	19	15	78.9474
rpoplin-dv42	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	97.0809	95.6851	98.5179	60.2481	1264	57	1263	19	15	78.9474
ckim-vqsr	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.3708	98.3432	98.3984	72.3852	3502	59	3502	57	45	78.9474
cchapple-custom	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	93.6192	89.9522	97.5980	66.0369	752	84	772	19	15	78.9474
jlack-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	het	96.0781	96.4876	95.6720	82.3695	934	34	840	38	30	78.9474
jlack-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	98.8242	99.0991	98.5507	72.0171	1320	12	1292	19	15	78.9474
hfeng-pmm1	SNP	*	HG002compoundhet	*	97.8294	95.8214	99.9233	39.2517	24743	1079	24742	19	15	78.9474
jli-custom	INDEL	I6_15	HG002compoundhet	het	86.7430	93.7500	80.7107	83.6785	195	13	159	38	30	78.9474
jmaeng-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	het	96.2389	96.7975	95.6867	83.0087	937	31	843	38	30	78.9474
jpowers-varprowl	SNP	ti	map_l125_m1_e0	homalt	99.2166	98.6148	99.8259	68.6168	10892	153	10892	19	15	78.9474
jpowers-varprowl	SNP	ti	map_l125_m2_e0	homalt	99.2383	98.6529	99.8307	70.9546	11205	153	11205	19	15	78.9474
jpowers-varprowl	SNP	ti	map_l125_m2_e1	homalt	99.2450	98.6647	99.8322	70.9730	11305	153	11305	19	15	78.9474
bgallagher-sentieon	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	*	99.7729	99.7421	99.8038	67.8356	9667	25	9667	19	15	78.9474
eyeh-varpipe	INDEL	D6_15	map_siren	het	93.1960	92.8571	93.5374	77.7104	260	20	275	19	15	78.9474
gduggal-bwavard	INDEL	I6_15	*	homalt	80.3317	67.3345	99.5468	32.9387	4201	2038	4173	19	15	78.9474
gduggal-bwavard	SNP	ti	map_l100_m2_e0	homalt	98.5295	97.2036	99.8921	62.3227	17797	512	17597	19	15	78.9474
gduggal-bwavard	SNP	ti	map_l100_m2_e1	homalt	98.5250	97.1937	99.8932	62.3163	17975	519	17773	19	15	78.9474
ghariani-varprowl	INDEL	I6_15	map_l100_m1_e0	het	80.0000	88.1356	73.2394	89.4659	52	7	52	19	15	78.9474
ghariani-varprowl	INDEL	I6_15	map_l100_m2_e0	het	79.6992	86.8852	73.6111	90.3356	53	8	53	19	15	78.9474
ghariani-varprowl	INDEL	I6_15	map_l100_m2_e1	het	79.6992	86.8852	73.6111	90.4762	53	8	53	19	15	78.9474
gduggal-snapvard	SNP	ti	map_l125_m0_e0	homalt	96.9471	94.4778	99.5488	70.5648	4243	248	4192	19	15	78.9474
gduggal-snapvard	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	37.7497	23.8032	91.1628	65.8188	179	573	196	19	15	78.9474
qzeng-custom	SNP	tv	map_l100_m2_e0	*	88.2470	80.1862	98.1096	78.5989	20073	4960	20033	386	305	79.0155
ckim-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	97.3551	95.7767	98.9864	63.1106	6055	267	6055	62	49	79.0323
ckim-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	97.3551	95.7767	98.9864	63.1106	6055	267	6055	62	49	79.0323
ckim-isaac	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	92.6629	89.7351	95.7882	48.3290	28184	3224	28110	1236	977	79.0453
ckim-isaac	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	92.6629	89.7351	95.7882	48.3290	28184	3224	28110	1236	977	79.0453
gduggal-bwafb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	90.9017	87.1048	95.0448	58.1886	1405	208	2014	105	83	79.0476

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