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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1390 1391 1392 1393 1394 1395 1396 1397 1398 ... 1720 1721 » 69651-69700 / 86044 show all
gduggal-snapvard	INDEL	*	HG002compoundhet	*	47.5012	42.0784	54.5285	56.5286	12605	17351	24630	20539	16069	78.2365
gduggal-bwafb	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	het	95.7841	93.1472	98.5746	46.7673	14680	1080	25103	363	284	78.2369
gduggal-bwafb	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	83.9148	73.4651	97.8302	47.7704	706	255	2074	46	36	78.2609
gduggal-bwaplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	67.4944	52.3636	94.9227	82.7953	432	393	430	23	18	78.2609
gduggal-bwaplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	67.4944	52.3636	94.9227	82.7953	432	393	430	23	18	78.2609
eyeh-varpipe	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	95.5076	97.4127	93.6755	70.3048	753	20	1022	69	54	78.2609
gduggal-bwavard	SNP	*	map_l125_m1_e0	homalt	98.6701	97.5096	99.8585	66.2879	16484	421	16234	23	18	78.2609
gduggal-bwavard	SNP	*	map_l125_m2_e0	homalt	98.6652	97.4964	99.8623	68.6081	16940	435	16685	23	18	78.2609
gduggal-bwavard	SNP	*	map_l125_m2_e1	homalt	98.6568	97.4789	99.8635	68.6528	17090	442	16828	23	18	78.2609
gduggal-snapvard	SNP	*	map_l125_m0_e0	homalt	97.1180	94.7259	99.6341	71.0042	6358	354	6263	23	18	78.2609
ckim-dragen	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	97.4000	96.5248	98.2912	75.1339	1361	49	1323	23	18	78.2609
ckim-gatk	INDEL	D1_5	HG002complexvar	*	99.5163	99.3153	99.7181	58.5688	32491	224	32545	92	72	78.2609
cchapple-custom	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.4541	99.1074	99.8032	43.2339	11769	106	11664	23	18	78.2609
egarrison-hhga	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	*	78.4352	68.5826	91.5936	64.7059	1229	563	1253	115	90	78.2609
eyeh-varpipe	INDEL	*	map_siren	homalt	94.7726	96.1959	93.3908	81.3483	2554	101	2925	207	162	78.2609
eyeh-varpipe	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	0.0000	0.0000	32.3529	97.2222	0	0	11	23	18	78.2609
bgallagher-sentieon	SNP	*	map_l100_m1_e0	homalt	99.7886	99.6630	99.9146	57.7258	26912	91	26912	23	18	78.2609
bgallagher-sentieon	SNP	*	map_l100_m2_e0	homalt	99.7908	99.6657	99.9162	60.2352	27431	92	27431	23	18	78.2609
bgallagher-sentieon	SNP	*	map_l100_m2_e1	homalt	99.7911	99.6654	99.9170	60.2187	27703	93	27703	23	18	78.2609
ndellapenna-hhga	INDEL	D1_5	segdup	het	98.0825	99.4220	96.7787	93.6753	688	4	691	23	18	78.2609
ndellapenna-hhga	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	64.4666	47.9448	98.3624	43.7187	3266	3546	2763	46	36	78.2609
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	95.4955	96.8668	94.1624	79.5749	371	12	371	23	18	78.2609
hfeng-pmm1	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	96.8585	94.6327	99.1916	50.2361	2821	160	2822	23	18	78.2609
hfeng-pmm2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	97.1586	95.2030	99.1964	50.6041	2838	143	2839	23	18	78.2609
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	96.6345	95.4020	97.8993	66.6779	3880	187	3868	83	65	78.3133
anovak-vg	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	94.0474	96.9194	91.3406	62.4853	1636	52	1751	166	130	78.3133
anovak-vg	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	54.6126	50.3907	59.6067	38.4218	16121	15871	22551	15282	11968	78.3144
anovak-vg	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	48.9297	42.6581	57.3634	45.6299	6307	8478	6466	4806	3764	78.3188
anovak-vg	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	*	63.5093	59.8218	67.6813	39.7409	21890	14702	30217	14429	11301	78.3214
mlin-fermikit	INDEL	*	map_l125_m1_e0	*	68.2325	56.7632	85.5103	80.5660	1196	911	1198	203	159	78.3251
jpowers-varprowl	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	84.2056	79.3893	89.6441	65.5967	2808	729	2796	323	253	78.3282
gduggal-snapvard	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	71.3469	89.3925	59.3632	66.7339	5739	681	11355	7773	6089	78.3353
gduggal-snapvard	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	71.3469	89.3925	59.3632	66.7339	5739	681	11355	7773	6089	78.3353
qzeng-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	94.3405	95.3885	93.3153	37.1067	6371	308	12759	914	716	78.3370
gduggal-bwafb	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	94.7146	92.7089	96.8091	59.8061	29118	2290	29975	988	774	78.3401
gduggal-bwafb	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	94.7146	92.7089	96.8091	59.8061	29118	2290	29975	988	774	78.3401
ndellapenna-hhga	SNP	tv	*	homalt	99.9152	99.8722	99.9583	20.9089	376641	482	376648	157	123	78.3439
qzeng-custom	INDEL	D6_15	HG002compoundhet	homalt	15.8393	95.8333	8.6331	43.0328	23	1	24	254	199	78.3465
gduggal-bwaplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	83.5380	73.1417	97.3796	64.9640	10814	3971	10814	291	228	78.3505
cchapple-custom	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	94.0259	90.8384	97.4454	47.9934	3619	365	3700	97	76	78.3505
gduggal-snapvard	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	64.3466	65.7191	63.0303	66.4559	10565	5511	13341	7825	6132	78.3642
gduggal-snapvard	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	64.3466	65.7191	63.0303	66.4559	10565	5511	13341	7825	6132	78.3642
gduggal-snapvard	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	79.0223	86.0771	73.0363	71.1846	915	148	1590	587	460	78.3646
anovak-vg	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	62.7686	68.2214	58.1230	35.1882	8542	3979	16951	12213	9571	78.3673
qzeng-custom	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	97.6451	97.4107	97.8807	69.5745	5944	158	34593	749	587	78.3712
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.8269	98.7352	98.9188	69.0820	13583	174	13540	148	116	78.3784
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.8269	98.7352	98.9188	69.0820	13583	174	13540	148	116	78.3784
gduggal-snapvard	INDEL	I6_15	map_l150_m2_e0	*	61.1650	72.0000	53.1646	88.2789	18	7	42	37	29	78.3784
gduggal-snapvard	INDEL	I6_15	map_l150_m2_e0	het	64.5327	93.3333	49.3151	88.3013	14	1	36	37	29	78.3784
gduggal-snapvard	INDEL	I6_15	map_l150_m2_e1	*	62.2963	74.0741	53.7500	88.5057	20	7	43	37	29	78.3784

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