PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
69001-69050 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | * | map_l125_m2_e0 | homalt | 98.8189 | 98.6894 | 98.9488 | 87.4319 | 753 | 10 | 753 | 8 | 6 | 75.0000 | |
| gduggal-bwafb | INDEL | * | map_l150_m1_e0 | homalt | 98.1582 | 98.0519 | 98.2646 | 89.3558 | 453 | 9 | 453 | 8 | 6 | 75.0000 | |
| gduggal-bwafb | INDEL | * | map_l150_m2_e0 | homalt | 98.1250 | 97.9210 | 98.3299 | 90.1643 | 471 | 10 | 471 | 8 | 6 | 75.0000 | |
| gduggal-bwafb | INDEL | * | map_l250_m1_e0 | homalt | 97.7376 | 99.0826 | 96.4286 | 95.4155 | 108 | 1 | 108 | 4 | 3 | 75.0000 | |
| gduggal-bwafb | INDEL | * | map_l250_m2_e0 | homalt | 97.8541 | 99.1304 | 96.6102 | 95.7812 | 114 | 1 | 114 | 4 | 3 | 75.0000 | |
| gduggal-bwafb | INDEL | * | map_l250_m2_e1 | homalt | 97.8723 | 99.1379 | 96.6387 | 95.8709 | 115 | 1 | 115 | 4 | 3 | 75.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.5573 | 99.3217 | 99.7940 | 54.6839 | 25187 | 172 | 25185 | 52 | 39 | 75.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | HG002complexvar | hetalt | 77.8589 | 64.7773 | 97.5610 | 66.3244 | 160 | 87 | 160 | 4 | 3 | 75.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 76.5258 | 62.9344 | 97.6048 | 68.0077 | 163 | 96 | 163 | 4 | 3 | 75.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 50.3713 | 34.4623 | 93.5632 | 71.0771 | 407 | 774 | 407 | 28 | 21 | 75.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 34.2857 | 24.0000 | 60.0000 | 90.6542 | 6 | 19 | 6 | 4 | 3 | 75.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 54.1881 | 37.8431 | 95.3871 | 85.0345 | 579 | 951 | 579 | 28 | 21 | 75.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 54.1881 | 37.8431 | 95.3871 | 85.0345 | 579 | 951 | 579 | 28 | 21 | 75.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 91.4102 | 87.2727 | 95.9596 | 87.5628 | 96 | 14 | 95 | 4 | 3 | 75.0000 | |
| gduggal-bwavard | SNP | * | map_l150_m1_e0 | homalt | 98.6799 | 97.5694 | 99.8159 | 71.2383 | 10999 | 274 | 10841 | 20 | 15 | 75.0000 | |
| gduggal-bwavard | SNP | * | map_l150_m2_e0 | homalt | 98.6803 | 97.5639 | 99.8226 | 73.2845 | 11414 | 285 | 11251 | 20 | 15 | 75.0000 | |
| gduggal-bwavard | SNP | * | map_l150_m2_e1 | homalt | 98.6774 | 97.5564 | 99.8244 | 73.3124 | 11538 | 289 | 11370 | 20 | 15 | 75.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.4522 | 95.3431 | 99.6567 | 58.4374 | 1167 | 57 | 1161 | 4 | 3 | 75.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 93.4579 | 88.5135 | 98.9873 | 78.5209 | 393 | 51 | 391 | 4 | 3 | 75.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 97.6712 | 95.6754 | 99.7520 | 53.7159 | 1615 | 73 | 1609 | 4 | 3 | 75.0000 | |
| gduggal-bwavard | SNP | ti | map_l125_m1_e0 | homalt | 98.6148 | 97.3744 | 99.8872 | 66.1535 | 10755 | 290 | 10628 | 12 | 9 | 75.0000 | |
| gduggal-bwavard | SNP | ti | map_l125_m2_e0 | homalt | 98.6173 | 97.3763 | 99.8904 | 68.4929 | 11060 | 298 | 10932 | 12 | 9 | 75.0000 | |
| gduggal-bwavard | SNP | ti | map_l125_m2_e1 | homalt | 98.6250 | 97.3905 | 99.8913 | 68.5234 | 11159 | 299 | 11030 | 12 | 9 | 75.0000 | |
| gduggal-bwavard | SNP | ti | map_l150_m0_e0 | homalt | 98.0657 | 96.4868 | 99.6971 | 76.4491 | 2664 | 97 | 2633 | 8 | 6 | 75.0000 | |
| gduggal-bwavard | SNP | ti | map_l150_m1_e0 | homalt | 98.6247 | 97.4478 | 99.8303 | 71.2444 | 7140 | 187 | 7059 | 12 | 9 | 75.0000 | |
| gduggal-bwavard | SNP | ti | map_l150_m2_e0 | homalt | 98.6236 | 97.4396 | 99.8368 | 73.2710 | 7421 | 195 | 7339 | 12 | 9 | 75.0000 | |
| gduggal-bwavard | SNP | ti | map_l150_m2_e1 | homalt | 98.6309 | 97.4522 | 99.8384 | 73.3079 | 7497 | 196 | 7414 | 12 | 9 | 75.0000 | |
| gduggal-bwavard | SNP | ti | map_l250_m0_e0 | homalt | 97.4326 | 95.8716 | 99.0453 | 92.4843 | 418 | 18 | 415 | 4 | 3 | 75.0000 | |
| gduggal-bwavard | SNP | tv | map_l150_m1_e0 | homalt | 98.7838 | 97.7952 | 99.7926 | 71.2507 | 3859 | 87 | 3849 | 8 | 6 | 75.0000 | |
| gduggal-bwavard | SNP | tv | map_l150_m2_e0 | homalt | 98.7875 | 97.7957 | 99.7996 | 73.3173 | 3993 | 90 | 3984 | 8 | 6 | 75.0000 | |
| gduggal-bwavard | SNP | tv | map_l150_m2_e1 | homalt | 98.7655 | 97.7504 | 99.8019 | 73.3170 | 4041 | 93 | 4031 | 8 | 6 | 75.0000 | |
| gduggal-bwavard | SNP | tv | map_siren | homalt | 98.5863 | 97.3028 | 99.9041 | 54.3761 | 16775 | 465 | 16665 | 16 | 12 | 75.0000 | |
| gduggal-snapfb | INDEL | * | map_l250_m1_e0 | homalt | 95.8525 | 95.4128 | 96.2963 | 96.6728 | 104 | 5 | 104 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | * | map_l250_m2_e0 | homalt | 95.1542 | 93.9130 | 96.4286 | 96.9449 | 108 | 7 | 108 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | * | map_l250_m2_e1 | homalt | 95.1965 | 93.9655 | 96.4602 | 96.9891 | 109 | 7 | 109 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 66.6667 | 0 | 0 | 0 | 4 | 3 | 75.0000 | ||
| gduggal-snapfb | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 20.0000 | 93.3333 | 0 | 0 | 1 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 20.0000 | 96.9697 | 0 | 0 | 1 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 20.0000 | 96.7105 | 0 | 0 | 1 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 42.8571 | 96.1538 | 0 | 0 | 3 | 4 | 3 | 75.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 67.2157 | 50.9066 | 98.9011 | 51.7881 | 365 | 352 | 360 | 4 | 3 | 75.0000 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 82.6087 | 99.9777 | 0 | 1 | 19 | 4 | 3 | 75.0000 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 80.0000 | 99.9773 | 0 | 0 | 16 | 4 | 3 | 75.0000 | |
| gduggal-bwavard | INDEL | D1_5 | segdup | * | 92.2805 | 91.6591 | 92.9104 | 95.4235 | 1011 | 92 | 996 | 76 | 57 | 75.0000 | |
| gduggal-bwavard | INDEL | D1_5 | segdup | het | 93.9882 | 98.5549 | 89.8260 | 96.1006 | 682 | 10 | 671 | 76 | 57 | 75.0000 | |
| gduggal-bwavard | INDEL | I1_5 | func_cds | * | 94.9210 | 94.4444 | 95.4023 | 36.0294 | 170 | 10 | 166 | 8 | 6 | 75.0000 | |
| gduggal-bwavard | INDEL | I1_5 | func_cds | het | 91.9355 | 96.6102 | 87.6923 | 50.3817 | 57 | 2 | 57 | 8 | 6 | 75.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 19.8656 | 11.2903 | 82.6087 | 87.7660 | 21 | 165 | 19 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.4262 | 94.1386 | 98.8277 | 32.4619 | 9797 | 610 | 9779 | 116 | 87 | 75.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 33.4975 | 22.2222 | 68.0000 | 60.3175 | 6 | 21 | 17 | 8 | 6 | 75.0000 | |