PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
68951-69000 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 42.8571 | 98.1432 | 0 | 0 | 3 | 4 | 3 | 75.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 94.4702 | 93.2292 | 95.7447 | 81.9664 | 358 | 26 | 360 | 16 | 12 | 75.0000 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.3139 | 89.5894 | 97.3615 | 44.5095 | 2160 | 251 | 2214 | 60 | 45 | 75.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.1942 | 99.4652 | 98.9247 | 51.8135 | 372 | 2 | 368 | 4 | 3 | 75.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5931 | 99.6524 | 99.5338 | 59.0453 | 860 | 3 | 854 | 4 | 3 | 75.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4269 | 99.0751 | 99.7811 | 30.6904 | 1714 | 16 | 1823 | 4 | 3 | 75.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 92.5926 | 100.0000 | 86.2069 | 89.1386 | 25 | 0 | 25 | 4 | 3 | 75.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.5410 | 96.4067 | 98.7024 | 79.1406 | 1100 | 41 | 1217 | 16 | 12 | 75.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 33.3333 | 100.0000 | 20.0000 | 89.3617 | 1 | 0 | 1 | 4 | 3 | 75.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.1748 | 98.8355 | 99.5163 | 68.9098 | 1358 | 16 | 1646 | 8 | 6 | 75.0000 | |
| ckim-dragen | INDEL | D1_5 | map_siren | homalt | 99.2693 | 98.8870 | 99.6546 | 81.5458 | 1155 | 13 | 1154 | 4 | 3 | 75.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.6173 | 97.7724 | 99.4771 | 72.6068 | 15230 | 347 | 15218 | 80 | 60 | 75.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m0_e0 | homalt | 97.8204 | 99.1228 | 96.5517 | 84.2818 | 113 | 1 | 112 | 4 | 3 | 75.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m1_e0 | homalt | 98.7749 | 98.7768 | 98.7730 | 82.1174 | 323 | 4 | 322 | 4 | 3 | 75.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m2_e0 | homalt | 98.8253 | 98.8270 | 98.8235 | 83.5590 | 337 | 4 | 336 | 4 | 3 | 75.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m2_e1 | homalt | 98.8321 | 98.8338 | 98.8304 | 83.8298 | 339 | 4 | 338 | 4 | 3 | 75.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l150_m1_e0 | homalt | 98.2317 | 98.4848 | 97.9798 | 85.9375 | 195 | 3 | 194 | 4 | 3 | 75.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l150_m2_e0 | homalt | 98.2581 | 98.5075 | 98.0100 | 87.6079 | 198 | 3 | 197 | 4 | 3 | 75.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l150_m2_e1 | homalt | 98.2837 | 98.5294 | 98.0392 | 87.7182 | 201 | 3 | 200 | 4 | 3 | 75.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.6521 | 97.7707 | 99.5495 | 74.2085 | 921 | 21 | 884 | 4 | 3 | 75.0000 | |
| ckim-dragen | INDEL | I6_15 | map_siren | homalt | 97.8261 | 100.0000 | 95.7447 | 85.1501 | 90 | 0 | 90 | 4 | 3 | 75.0000 | |
| ckim-dragen | SNP | ti | map_l250_m0_e0 | homalt | 99.3135 | 99.5413 | 99.0868 | 87.9769 | 434 | 2 | 434 | 4 | 3 | 75.0000 | |
| ckim-dragen | SNP | tv | map_l150_m0_e0 | homalt | 99.2838 | 99.1717 | 99.3962 | 72.8817 | 1317 | 11 | 1317 | 8 | 6 | 75.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.0078 | 98.8530 | 99.1632 | 72.8794 | 948 | 11 | 948 | 8 | 6 | 75.0000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.3494 | 96.6507 | 98.0583 | 77.4370 | 202 | 7 | 202 | 4 | 3 | 75.0000 | |
| ciseli-custom | SNP | * | map_l125_m2_e1 | hetalt | 71.6981 | 63.3333 | 82.6087 | 79.6460 | 19 | 11 | 19 | 4 | 3 | 75.0000 | |
| ciseli-custom | SNP | tv | map_l125_m1_e0 | hetalt | 71.6981 | 63.3333 | 82.6087 | 75.5319 | 19 | 11 | 19 | 4 | 3 | 75.0000 | |
| ciseli-custom | SNP | tv | map_l125_m2_e0 | hetalt | 71.6981 | 63.3333 | 82.6087 | 79.2793 | 19 | 11 | 19 | 4 | 3 | 75.0000 | |
| ciseli-custom | SNP | tv | map_l125_m2_e1 | hetalt | 71.6981 | 63.3333 | 82.6087 | 79.6460 | 19 | 11 | 19 | 4 | 3 | 75.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.7270 | 98.3908 | 99.0654 | 70.1742 | 428 | 7 | 424 | 4 | 3 | 75.0000 | |
| ciseli-custom | INDEL | D16_PLUS | segdup | * | 70.3704 | 65.5172 | 76.0000 | 92.2118 | 38 | 20 | 38 | 12 | 9 | 75.0000 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 33.3333 | 33.3333 | 33.3333 | 97.4576 | 2 | 4 | 2 | 4 | 3 | 75.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m0_e0 | homalt | 70.5882 | 85.7143 | 60.0000 | 94.7368 | 6 | 1 | 6 | 4 | 3 | 75.0000 | |
| ciseli-custom | INDEL | D6_15 | tech_badpromoters | * | 68.7500 | 64.7059 | 73.3333 | 53.1250 | 11 | 6 | 11 | 4 | 3 | 75.0000 | |
| ciseli-custom | INDEL | I1_5 | map_l150_m0_e0 | * | 51.7241 | 45.4545 | 60.0000 | 94.3966 | 80 | 96 | 78 | 52 | 39 | 75.0000 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m1_e0 | * | 43.9560 | 37.7358 | 52.6316 | 97.2333 | 40 | 66 | 40 | 36 | 27 | 75.0000 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m2_e0 | * | 45.5959 | 38.9381 | 55.0000 | 97.4367 | 44 | 69 | 44 | 36 | 27 | 75.0000 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m2_e1 | * | 46.1538 | 39.4737 | 55.5556 | 97.4782 | 45 | 69 | 45 | 36 | 27 | 75.0000 | |
| ciseli-custom | INDEL | I1_5 | tech_badpromoters | * | 52.1739 | 54.5455 | 50.0000 | 52.0000 | 12 | 10 | 12 | 12 | 9 | 75.0000 | |
| ciseli-custom | INDEL | I6_15 | HG002complexvar | het | 39.0345 | 26.1146 | 77.2559 | 60.9179 | 615 | 1740 | 625 | 184 | 138 | 75.0000 | |
| ciseli-custom | SNP | * | map_l125_m1_e0 | hetalt | 71.6981 | 63.3333 | 82.6087 | 75.5319 | 19 | 11 | 19 | 4 | 3 | 75.0000 | |
| ciseli-custom | SNP | * | map_l125_m2_e0 | hetalt | 71.6981 | 63.3333 | 82.6087 | 79.2793 | 19 | 11 | 19 | 4 | 3 | 75.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 93.7249 | 90.0709 | 97.6879 | 63.9583 | 508 | 56 | 507 | 12 | 9 | 75.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 86.0465 | 90.2439 | 82.2222 | 92.8458 | 37 | 4 | 37 | 8 | 6 | 75.0000 | |
| gduggal-bwafb | SNP | ti | map_l125_m0_e0 | homalt | 99.3844 | 98.8644 | 99.9100 | 71.6564 | 4440 | 51 | 4440 | 4 | 3 | 75.0000 | |
| gduggal-bwafb | SNP | tv | map_l125_m1_e0 | homalt | 99.4861 | 99.1126 | 99.8624 | 68.8267 | 5808 | 52 | 5808 | 8 | 6 | 75.0000 | |
| gduggal-bwafb | SNP | tv | map_l125_m2_e0 | homalt | 99.4828 | 99.1025 | 99.8660 | 70.9836 | 5963 | 54 | 5963 | 8 | 6 | 75.0000 | |
| gduggal-bwafb | SNP | tv | map_l125_m2_e1 | homalt | 99.4877 | 99.1110 | 99.8673 | 71.0512 | 6020 | 54 | 6020 | 8 | 6 | 75.0000 | |
| gduggal-bwafb | INDEL | * | map_l100_m0_e0 | homalt | 98.5280 | 98.6248 | 98.4314 | 85.7978 | 502 | 7 | 502 | 8 | 6 | 75.0000 | |
| gduggal-bwafb | INDEL | * | map_l125_m1_e0 | homalt | 98.7688 | 98.6339 | 98.9041 | 86.6472 | 722 | 10 | 722 | 8 | 6 | 75.0000 | |