PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
68801-68850 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 90.7895 | 92.0000 | 89.6104 | 65.7778 | 69 | 6 | 69 | 8 | 6 | 75.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.5962 | 97.1292 | 98.0676 | 74.3176 | 203 | 6 | 203 | 4 | 3 | 75.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.0545 | 99.2126 | 96.9231 | 76.0589 | 126 | 1 | 126 | 4 | 3 | 75.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 90.5660 | 96.0000 | 85.7143 | 87.2727 | 24 | 1 | 24 | 4 | 3 | 75.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 33.3333 | 100.0000 | 20.0000 | 88.0952 | 1 | 0 | 1 | 4 | 3 | 75.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.9799 | 98.8355 | 99.1247 | 71.3838 | 1358 | 16 | 1359 | 12 | 9 | 75.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 70.7177 | 59.5238 | 87.0968 | 98.6964 | 25 | 17 | 27 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m2_e0 | * | 43.0769 | 31.8182 | 66.6667 | 94.2308 | 7 | 15 | 8 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m2_e1 | * | 43.0769 | 31.8182 | 66.6667 | 94.3396 | 7 | 15 | 8 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 33.3333 | 0.0000 | 96.8000 | 1 | 2 | 0 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m1_e0 | * | 53.8462 | 46.6667 | 63.6364 | 89.7196 | 7 | 8 | 7 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m2_e0 | * | 53.8462 | 46.6667 | 63.6364 | 91.6031 | 7 | 8 | 7 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m2_e1 | * | 53.8462 | 46.6667 | 63.6364 | 91.7293 | 7 | 8 | 7 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m1_e0 | * | 49.3151 | 33.9623 | 90.0000 | 92.9701 | 36 | 70 | 36 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m2_e0 | * | 50.9554 | 35.3982 | 90.9091 | 94.0860 | 40 | 73 | 40 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m2_e1 | * | 51.5723 | 35.9649 | 91.1111 | 94.1710 | 41 | 73 | 41 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I1_5 | segdup | het | 95.8561 | 94.7955 | 96.9407 | 92.6504 | 510 | 28 | 507 | 16 | 12 | 75.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l100_m0_e0 | * | 57.9710 | 45.4545 | 80.0000 | 87.8049 | 15 | 18 | 16 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m0_e0 | * | 42.8571 | 33.3333 | 60.0000 | 89.0110 | 5 | 10 | 6 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m1_e0 | * | 62.3288 | 52.0000 | 77.7778 | 89.1566 | 13 | 12 | 14 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m2_e0 | * | 62.3288 | 52.0000 | 77.7778 | 90.8629 | 13 | 12 | 14 | 4 | 3 | 75.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | HG002complexvar | * | 96.5485 | 94.7048 | 98.4655 | 65.1748 | 1556 | 87 | 1540 | 24 | 18 | 75.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.6714 | 99.7807 | 99.5624 | 68.6019 | 910 | 2 | 910 | 4 | 3 | 75.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.3817 | 99.0272 | 99.7387 | 76.7007 | 1527 | 15 | 1527 | 4 | 3 | 75.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.9992 | 98.4080 | 99.5976 | 63.6430 | 989 | 16 | 990 | 4 | 3 | 75.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3616 | 98.9595 | 99.7670 | 33.2686 | 1712 | 18 | 1713 | 4 | 3 | 75.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.6501 | 96.3918 | 98.9418 | 73.2295 | 374 | 14 | 374 | 4 | 3 | 75.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.6115 | 90.6040 | 96.8254 | 76.2264 | 135 | 14 | 122 | 4 | 3 | 75.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.1161 | 96.5935 | 99.6875 | 59.6596 | 1276 | 45 | 1276 | 4 | 3 | 75.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 93.0934 | 87.8423 | 99.0123 | 88.6586 | 802 | 111 | 802 | 8 | 6 | 75.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8164 | 99.6701 | 99.9632 | 59.9499 | 10875 | 36 | 10872 | 4 | 3 | 75.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.7738 | 84.9582 | 97.4441 | 50.1592 | 305 | 54 | 305 | 8 | 6 | 75.0000 | |
| rpoplin-dv42 | INDEL | * | map_l100_m0_e0 | homalt | 98.4283 | 98.4283 | 98.4283 | 84.0788 | 501 | 8 | 501 | 8 | 6 | 75.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 95.3876 | 92.5373 | 98.4190 | 58.7276 | 496 | 40 | 498 | 8 | 6 | 75.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.7618 | 99.5445 | 99.9801 | 51.1635 | 20107 | 92 | 20081 | 4 | 3 | 75.0000 | |
| ltrigg-rtg2 | SNP | * | map_l100_m0_e0 | homalt | 99.7457 | 99.5611 | 99.9309 | 58.9350 | 11569 | 51 | 11567 | 8 | 6 | 75.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.5046 | 99.0824 | 99.9304 | 64.6956 | 11446 | 106 | 11491 | 8 | 6 | 75.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.5046 | 99.0824 | 99.9304 | 64.6956 | 11446 | 106 | 11491 | 8 | 6 | 75.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8244 | 99.7128 | 99.9361 | 40.9541 | 6250 | 18 | 6259 | 4 | 3 | 75.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7907 | 99.6802 | 99.9015 | 41.5683 | 4052 | 13 | 4057 | 4 | 3 | 75.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m1_e0 | homalt | 99.7778 | 99.6246 | 99.9315 | 63.2977 | 5838 | 22 | 5839 | 4 | 3 | 75.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m2_e0 | homalt | 99.7836 | 99.6344 | 99.9333 | 66.1132 | 5995 | 22 | 5996 | 4 | 3 | 75.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m2_e1 | homalt | 99.7857 | 99.6378 | 99.9340 | 66.1624 | 6052 | 22 | 6058 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 47.0332 | 30.8307 | 99.1285 | 43.6118 | 386 | 866 | 455 | 4 | 3 | 75.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.8453 | 98.4375 | 97.2603 | 65.7277 | 567 | 9 | 568 | 16 | 12 | 75.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 93.4954 | 91.7293 | 95.3307 | 81.1445 | 244 | 22 | 245 | 12 | 9 | 75.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 65.1258 | 48.6464 | 98.4906 | 44.0338 | 575 | 607 | 522 | 8 | 6 | 75.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 91.8079 | 86.9048 | 97.2973 | 76.0905 | 146 | 22 | 144 | 4 | 3 | 75.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 93.9227 | 92.3913 | 95.5056 | 68.1004 | 85 | 7 | 85 | 4 | 3 | 75.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 88.5478 | 83.8926 | 93.7500 | 74.1935 | 125 | 24 | 120 | 8 | 6 | 75.0000 | |