PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
68501-68550 / 86044 show all | |||||||||||||||
| anovak-vg | SNP | tv | map_l250_m0_e0 | homalt | 79.5181 | 67.3575 | 97.0370 | 94.8157 | 130 | 63 | 131 | 4 | 3 | 75.0000 | |
| astatham-gatk | INDEL | * | map_l150_m0_e0 | homalt | 98.4894 | 99.3902 | 97.6048 | 91.2703 | 163 | 1 | 163 | 4 | 3 | 75.0000 | |
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.0000 | 93.0070 | 97.0803 | 92.6620 | 133 | 10 | 133 | 4 | 3 | 75.0000 | |
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5665 | 95.0980 | 96.0396 | 92.5296 | 97 | 5 | 97 | 4 | 3 | 75.0000 | |
| astatham-gatk | SNP | * | map_l100_m0_e0 | homalt | 99.3208 | 98.7866 | 99.8608 | 60.2139 | 11479 | 141 | 11479 | 16 | 12 | 75.0000 | |
| astatham-gatk | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.0231 | 98.3067 | 99.7501 | 65.5325 | 3193 | 55 | 3193 | 8 | 6 | 75.0000 | |
| astatham-gatk | SNP | tv | map_l150_m0_e0 | homalt | 98.8226 | 97.9669 | 99.6935 | 75.2231 | 1301 | 27 | 1301 | 4 | 3 | 75.0000 | |
| astatham-gatk | SNP | tv | map_l250_m0_e0 | homalt | 97.3958 | 96.8912 | 97.9058 | 92.3692 | 187 | 6 | 187 | 4 | 3 | 75.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.3181 | 99.2492 | 99.3870 | 72.2871 | 1322 | 10 | 1297 | 8 | 6 | 75.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.0476 | 100.0000 | 98.1132 | 80.2054 | 208 | 0 | 208 | 4 | 3 | 75.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.7043 | 98.0318 | 99.3860 | 61.8783 | 1295 | 26 | 1295 | 8 | 6 | 75.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.7675 | 99.7915 | 99.7435 | 70.0911 | 6223 | 13 | 6223 | 16 | 12 | 75.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.0000 | 93.0070 | 97.0803 | 92.6304 | 133 | 10 | 133 | 4 | 3 | 75.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5665 | 95.0980 | 96.0396 | 92.5019 | 97 | 5 | 97 | 4 | 3 | 75.0000 | |
| bgallagher-sentieon | SNP | * | map_l125_m1_e0 | homalt | 99.7275 | 99.5741 | 99.8813 | 63.4132 | 16833 | 72 | 16833 | 20 | 15 | 75.0000 | |
| bgallagher-sentieon | SNP | * | map_l125_m2_e0 | homalt | 99.7291 | 99.5741 | 99.8845 | 66.0253 | 17301 | 74 | 17301 | 20 | 15 | 75.0000 | |
| bgallagher-sentieon | SNP | * | map_l125_m2_e1 | homalt | 99.7315 | 99.5779 | 99.8856 | 66.0476 | 17458 | 74 | 17458 | 20 | 15 | 75.0000 | |
| bgallagher-sentieon | SNP | * | map_l150_m1_e0 | homalt | 99.6712 | 99.4855 | 99.8575 | 68.3134 | 11215 | 58 | 11215 | 16 | 12 | 75.0000 | |
| bgallagher-sentieon | SNP | * | map_l150_m2_e0 | homalt | 99.6746 | 99.4871 | 99.8627 | 70.7014 | 11639 | 60 | 11639 | 16 | 12 | 75.0000 | |
| bgallagher-sentieon | SNP | * | map_l150_m2_e1 | homalt | 99.6781 | 99.4927 | 99.8642 | 70.7146 | 11767 | 60 | 11767 | 16 | 12 | 75.0000 | |
| bgallagher-sentieon | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.8570 | 99.8412 | 99.8729 | 71.3127 | 3143 | 5 | 3143 | 4 | 3 | 75.0000 | |
| bgallagher-sentieon | SNP | ti | map_l125_m0_e0 | homalt | 99.5535 | 99.2875 | 99.8209 | 66.4916 | 4459 | 32 | 4459 | 8 | 6 | 75.0000 | |
| bgallagher-sentieon | SNP | ti | map_l250_m1_e0 | homalt | 99.3125 | 98.8799 | 99.7489 | 85.0633 | 1589 | 18 | 1589 | 4 | 3 | 75.0000 | |
| bgallagher-sentieon | SNP | ti | map_l250_m2_e0 | homalt | 99.3685 | 98.9708 | 99.7695 | 86.1400 | 1731 | 18 | 1731 | 4 | 3 | 75.0000 | |
| bgallagher-sentieon | SNP | ti | map_l250_m2_e1 | homalt | 99.3768 | 98.9842 | 99.7725 | 86.1825 | 1754 | 18 | 1754 | 4 | 3 | 75.0000 | |
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.6764 | 99.7409 | 99.6119 | 68.7361 | 3080 | 8 | 3080 | 12 | 9 | 75.0000 | |
| bgallagher-sentieon | SNP | tv | map_l150_m0_e0 | homalt | 99.5475 | 99.3976 | 99.6979 | 74.9100 | 1320 | 8 | 1320 | 4 | 3 | 75.0000 | |
| bgallagher-sentieon | SNP | tv | map_l250_m0_e0 | homalt | 98.1912 | 98.4456 | 97.9381 | 92.2400 | 190 | 3 | 190 | 4 | 3 | 75.0000 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.1539 | 96.1783 | 98.1494 | 73.9632 | 1208 | 48 | 1485 | 28 | 21 | 75.0000 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.5925 | 99.4826 | 99.7026 | 70.3810 | 1346 | 7 | 1341 | 4 | 3 | 75.0000 | |
| cchapple-custom | INDEL | * | map_l125_m0_e0 | homalt | 97.5089 | 96.4789 | 98.5612 | 87.0215 | 274 | 10 | 274 | 4 | 3 | 75.0000 | |
| cchapple-custom | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 76.4706 | 92.4107 | 0 | 0 | 13 | 4 | 3 | 75.0000 | |
| cchapple-custom | INDEL | C16_PLUS | HG002compoundhet | het | 0.0000 | 0.0000 | 76.4706 | 91.9811 | 0 | 0 | 13 | 4 | 3 | 75.0000 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 20.0000 | 98.0159 | 0 | 0 | 1 | 4 | 3 | 75.0000 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 97.7011 | 0 | 0 | 0 | 4 | 3 | 75.0000 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 29.8913 | 21.7391 | 47.8261 | 39.4737 | 10 | 36 | 11 | 12 | 9 | 75.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m1_e0 | het | 63.2911 | 50.0000 | 86.2069 | 85.6436 | 23 | 23 | 25 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m2_e0 | het | 61.7131 | 47.9167 | 86.6667 | 86.2385 | 23 | 25 | 26 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m2_e1 | het | 61.1033 | 47.0588 | 87.0968 | 85.9091 | 24 | 27 | 27 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l125_m1_e0 | * | 65.2174 | 55.5556 | 78.9474 | 91.3242 | 15 | 12 | 15 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l125_m1_e0 | het | 70.2703 | 65.0000 | 76.4706 | 88.5135 | 13 | 7 | 13 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l125_m2_e0 | * | 65.5738 | 55.5556 | 80.0000 | 91.3420 | 15 | 12 | 16 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l125_m2_e0 | het | 70.8171 | 65.0000 | 77.7778 | 88.4615 | 13 | 7 | 14 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l125_m2_e1 | * | 64.1711 | 53.5714 | 80.0000 | 91.5612 | 15 | 13 | 16 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l125_m2_e1 | het | 70.8171 | 65.0000 | 77.7778 | 88.6792 | 13 | 7 | 14 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D16_PLUS | segdup | het | 82.8571 | 78.3784 | 87.8788 | 91.3613 | 29 | 8 | 29 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 22.6415 | 15.3846 | 42.8571 | 75.0000 | 2 | 11 | 3 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 84.6703 | 85.1351 | 84.2105 | 80.3618 | 63 | 11 | 64 | 12 | 9 | 75.0000 | |
| anovak-vg | INDEL | D6_15 | map_l125_m0_e0 | het | 80.1909 | 82.7586 | 77.7778 | 92.4051 | 24 | 5 | 28 | 8 | 6 | 75.0000 | |
| anovak-vg | INDEL | D6_15 | map_l150_m0_e0 | * | 75.3769 | 75.0000 | 75.7576 | 93.5421 | 24 | 8 | 25 | 8 | 6 | 75.0000 | |