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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1357 1358 1359 1360 1361 1362 1363 1364 1365 ... 1720 1721 » 68001-68050 / 86044 show all
anovak-vg	INDEL	*	func_cds	*	81.4334	80.2247	82.6790	38.5816	357	88	358	75	54	72.0000
ckim-isaac	SNP	tv	*	homalt	98.1562	96.3855	99.9931	16.5795	363492	13631	363515	25	18	72.0000
egarrison-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	97.4782	96.3415	98.6420	70.2969	1817	69	1816	25	18	72.0000
ndellapenna-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	93.2394	90.3138	96.3610	69.7623	662	71	662	25	18	72.0000
qzeng-custom	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	83.1234	93.2203	75.0000	71.9101	55	4	75	25	18	72.0000
qzeng-custom	INDEL	D1_5	map_l100_m2_e1	*	90.1766	83.9608	97.3863	87.9176	1628	311	1863	50	36	72.0000
jpowers-varprowl	INDEL	I1_5	map_l125_m2_e0	het	93.6864	92.5553	94.8454	89.7981	460	37	460	25	18	72.0000
cchapple-custom	INDEL	I16_PLUS	HG002complexvar	*	97.1576	96.1803	98.1550	66.7729	1259	50	1330	25	18	72.0000
jmaeng-gatk	INDEL	D16_PLUS	*	het	97.5431	99.0503	96.0810	78.7734	3129	30	2893	118	85	72.0339
hfeng-pmm2	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.8203	98.1335	99.5168	73.5903	47370	901	47163	229	165	72.0524
ckim-vqsr	INDEL	I6_15	*	het	99.0039	98.6943	99.3155	60.3259	9902	131	9866	68	49	72.0588
egarrison-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	93.7816	96.6527	91.0761	57.6667	693	24	694	68	49	72.0588
anovak-vg	INDEL	D16_PLUS	*	*	64.9199	56.1321	76.9701	52.6377	3808	2976	3780	1131	815	72.0601
qzeng-custom	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	*	92.9935	92.8372	93.1502	44.3921	33971	2621	59822	4399	3170	72.0618
jpowers-varprowl	SNP	*	map_siren	homalt	99.5443	99.4144	99.6746	55.8957	54833	323	54834	179	129	72.0670
ciseli-custom	SNP	tv	map_l250_m2_e0	homalt	78.7009	75.5603	82.1138	88.5597	708	229	707	154	111	72.0779
ciseli-custom	SNP	tv	map_l250_m2_e1	homalt	78.9120	75.7928	82.2989	88.6021	717	229	716	154	111	72.0779
ckim-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	*	97.8001	97.9911	97.6098	69.6269	1756	36	1756	43	31	72.0930
ckim-isaac	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	*	82.8342	75.6494	91.5271	45.0163	932	300	929	86	62	72.0930
jpowers-varprowl	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	71.4004	63.9576	80.8036	71.2821	181	102	181	43	31	72.0930
anovak-vg	SNP	tv	map_siren	homalt	93.6911	88.7935	99.1605	53.2549	15308	1932	15238	129	93	72.0930
asubramanian-gatk	INDEL	D16_PLUS	HG002complexvar	*	96.5513	95.8004	97.3142	67.2463	1574	69	1558	43	31	72.0930
ckim-isaac	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	94.4269	92.1672	96.8002	61.2699	87051	7398	86368	2855	2059	72.1191
qzeng-custom	SNP	tv	map_siren	*	92.0283	86.1093	98.8212	67.3017	39550	6380	39401	470	339	72.1277
dgrover-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.3726	98.4555	98.2899	71.9884	3506	55	3506	61	44	72.1311
ndellapenna-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	96.6400	96.0539	97.2332	85.1791	4917	202	4920	140	101	72.1429
jpowers-varprowl	INDEL	D1_5	map_siren	*	94.5668	93.7093	95.4401	81.4755	3307	222	3307	158	114	72.1519
asubramanian-gatk	INDEL	*	HG002compoundhet	het	90.4926	96.2872	85.3557	79.1653	3942	152	3707	636	459	72.1698
anovak-vg	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	91.9743	92.1019	91.8470	57.2556	26028	2232	27420	2434	1757	72.1857
cchapple-custom	SNP	*	HG002complexvar	*	99.8003	99.6796	99.9214	18.6735	751964	2417	749599	590	426	72.2034
ciseli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	83.6913	86.7444	80.8458	71.7974	1636	250	1625	385	278	72.2078
gduggal-snapfb	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	88.4071	84.2391	93.0089	52.2708	5115	957	5122	385	278	72.2078
gduggal-snapplat	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	59.2248	49.9739	72.6787	68.3719	5739	5745	7342	2760	1993	72.2101
gduggal-snapplat	SNP	*	segdup	homalt	99.4486	99.0692	99.8310	88.7280	10643	100	10636	18	13	72.2222
cchapple-custom	INDEL	I6_15	*	het	98.6365	97.9268	99.3566	49.5505	9825	208	19457	126	91	72.2222
ciseli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	homalt	45.0000	69.2308	33.3333	58.4615	9	4	9	18	13	72.2222
cchapple-custom	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.4403	99.1066	99.7762	43.0060	6656	60	8025	18	13	72.2222
cchapple-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	96.2565	95.0509	97.4930	80.7300	653	34	700	18	13	72.2222
bgallagher-sentieon	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	*	96.9904	94.8590	99.2198	62.4389	2288	124	2289	18	13	72.2222
jpowers-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	43.2760	32.9738	62.9412	68.5185	214	435	214	126	91	72.2222
jpowers-varprowl	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	90.1734	87.6404	92.8571	52.1822	234	33	234	18	13	72.2222
jpowers-varprowl	SNP	tv	map_l100_m1_e0	homalt	99.1519	98.9052	99.3999	66.3513	8944	99	8944	54	39	72.2222
jlack-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	97.1776	96.3907	97.9775	74.4326	908	34	872	18	13	72.2222
jlack-gatk	SNP	*	map_l150_m1_e0	homalt	99.0703	98.3146	99.8379	69.3588	11083	190	11083	18	13	72.2222
jlack-gatk	SNP	*	map_l150_m2_e0	homalt	99.0914	98.3503	99.8438	71.6709	11506	193	11506	18	13	72.2222
jlack-gatk	SNP	*	map_l150_m2_e1	homalt	99.0927	98.3512	99.8455	71.6669	11632	195	11632	18	13	72.2222
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	98.7710	98.6981	98.8439	73.8011	1592	21	1539	18	13	72.2222
dgrover-gatk	SNP	*	map_l125_m1_e0	homalt	99.6085	99.3256	99.8929	63.9547	16791	114	16791	18	13	72.2222
dgrover-gatk	SNP	*	map_l125_m2_e0	homalt	99.6075	99.3209	99.8958	66.5083	17257	118	17257	18	13	72.2222
dgrover-gatk	SNP	*	map_l125_m2_e1	homalt	99.6110	99.3269	99.8967	66.5258	17414	118	17414	18	13	72.2222

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