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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1356 1357 1358 1359 1360 1361 1362 1363 1364 ... 1720 1721 » 67951-68000 / 86044 show all
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	69.0451	54.2606	94.9038	89.2027	987	832	987	53	38	71.6981
ghariani-varprowl	INDEL	D16_PLUS	map_siren	*	63.0655	62.9371	63.1944	94.7137	90	53	91	53	38	71.6981
ghariani-varprowl	INDEL	D16_PLUS	map_siren	het	72.0679	93.5897	58.5938	93.8343	73	5	75	53	38	71.6981
ckim-dragen	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	*	97.3289	97.6004	97.0588	69.9817	1749	43	1749	53	38	71.6981
eyeh-varpipe	INDEL	C1_5	HG002complexvar	homalt	0.0000	0.0000	93.9636	77.8451	0	0	825	53	38	71.6981
ndellapenna-hhga	SNP	ti	HG002complexvar	*	99.8069	99.6755	99.9387	17.4775	506786	1650	506808	311	223	71.7042
ckim-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.6452	99.7262	99.5644	75.3068	33145	91	33139	145	104	71.7241
ckim-isaac	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	93.7961	88.8038	99.3832	46.4455	7424	936	7412	46	33	71.7391
ckim-isaac	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	93.7961	88.8038	99.3832	46.4455	7424	936	7412	46	33	71.7391
ltrigg-rtg1	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	94.2071	90.0993	98.7075	49.5392	3540	389	3513	46	33	71.7391
ltrigg-rtg2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	94.0609	90.1200	98.3621	57.5242	5482	601	5525	92	66	71.7391
anovak-vg	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	97.9828	97.6625	98.3051	30.8535	2674	64	2668	46	33	71.7391
ghariani-varprowl	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	70.9804	63.9576	79.7357	72.0099	181	102	181	46	33	71.7391
gduggal-bwafb	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	82.8200	73.8119	94.3324	59.6824	2982	1058	5892	354	254	71.7514
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	92.6668	94.9700	90.4727	59.4634	1265	67	1244	131	94	71.7557
ciseli-custom	SNP	*	map_l250_m2_e0	homalt	80.9434	78.5927	83.4390	87.8922	2111	575	2106	418	300	71.7703
gduggal-snapvard	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	het	47.2648	48.0000	46.5517	55.5556	24	26	108	124	89	71.7742
ndellapenna-hhga	SNP	*	HG002complexvar	*	99.7910	99.6474	99.9350	18.9550	751721	2660	751769	489	351	71.7791
rpoplin-dv42	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7077	99.6531	99.7624	58.0995	16372	57	16373	39	28	71.7949
eyeh-varpipe	INDEL	C1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	0.0000	0.0000	84.0816	96.2647	0	0	206	39	28	71.7949
gduggal-snapvard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	43.9926	38.2022	51.8519	68.8462	68	110	84	78	56	71.7949
gduggal-snapvard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	58.8919	70.3704	50.6329	68.7129	57	24	80	78	56	71.7949
ckim-gatk	INDEL	D16_PLUS	HG002complexvar	*	97.6146	97.6263	97.6030	66.9174	1604	39	1588	39	28	71.7949
anovak-vg	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	47.9368	36.5290	69.7055	72.0207	2229	3873	9137	3971	2851	71.7955
anovak-vg	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	81.5683	79.9506	83.2528	70.9561	51513	12918	52192	10499	7538	71.7973
ndellapenna-hhga	INDEL	*	HG002complexvar	*	97.2866	96.6882	97.8924	67.2163	74390	2548	74363	1601	1150	71.8301
mlin-fermikit	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	98.3740	98.0805	98.6692	39.1607	10526	206	10528	142	102	71.8310
asubramanian-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	95.2696	96.9214	93.6732	86.2372	1763	56	1525	103	74	71.8447
asubramanian-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	95.2696	96.9214	93.6732	86.2372	1763	56	1525	103	74	71.8447
gduggal-snapvard	INDEL	D1_5	HG002complexvar	*	89.5567	91.9115	87.3195	53.8184	30067	2646	34830	5058	3634	71.8466
ghariani-varprowl	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	het	86.7002	91.4894	82.3875	75.9605	1247	116	1263	270	194	71.8519
anovak-vg	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	51.7017	43.2260	64.3120	56.8434	1758	2309	1748	970	697	71.8557
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	het	96.8262	99.5074	94.2857	83.6449	606	3	528	32	23	71.8750
ndellapenna-hhga	INDEL	*	map_siren	homalt	98.6802	98.5687	98.7920	79.0989	2617	38	2617	32	23	71.8750
mlin-fermikit	INDEL	D6_15	map_l100_m1_e0	het	75.2952	75.3968	75.1938	79.7488	95	31	97	32	23	71.8750
mlin-fermikit	INDEL	D6_15	map_l100_m2_e0	het	76.2275	76.3359	76.1194	81.1001	100	31	102	32	23	71.8750
jmaeng-gatk	INDEL	I1_5	HG002complexvar	*	99.3649	98.9270	99.8067	56.9963	33005	358	33051	64	46	71.8750
ckim-isaac	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	95.2997	91.1929	99.7939	58.4384	15480	1495	15495	32	23	71.8750
ckim-isaac	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	95.2997	91.1929	99.7939	58.4384	15480	1495	15495	32	23	71.8750
dgrover-gatk	INDEL	D16_PLUS	*	homalt	98.8856	99.6454	98.1374	70.5317	1686	6	1686	32	23	71.8750
dgrover-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.4945	99.5196	97.4902	74.7924	1243	6	1243	32	23	71.8750
dgrover-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.4945	99.5196	97.4902	74.7924	1243	6	1243	32	23	71.8750
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	96.5189	98.9555	94.1994	86.2906	1800	19	1559	96	69	71.8750
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	96.5189	98.9555	94.1994	86.2906	1800	19	1559	96	69	71.8750
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	90.9226	92.4365	89.4575	60.7169	1491	122	1451	171	123	71.9298
anovak-vg	INDEL	I1_5	map_l100_m2_e1	*	57.8586	58.9964	56.7639	84.9109	823	572	856	652	469	71.9325
ckim-isaac	INDEL	I6_15	*	het	88.7567	85.9065	91.8024	48.2080	8619	1414	8623	770	554	71.9481
egarrison-hhga	INDEL	I16_PLUS	HG002compoundhet	*	86.9177	82.7345	91.5464	49.7800	1773	370	1776	164	118	71.9512
anovak-vg	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	51.5950	42.4685	65.7179	59.2998	2123	2876	2101	1096	789	71.9891
anovak-vg	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	51.5950	42.4685	65.7179	59.2998	2123	2876	2101	1096	789	71.9891

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