PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67751-67800 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.3087 | 97.3822 | 99.2529 | 77.8277 | 930 | 25 | 930 | 7 | 5 | 71.4286 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 89.9699 | 84.9462 | 95.6250 | 69.2308 | 158 | 28 | 153 | 7 | 5 | 71.4286 | |
| qzeng-custom | INDEL | I1_5 | HG002compoundhet | hetalt | 84.6325 | 73.4723 | 99.7902 | 54.7416 | 8212 | 2965 | 3329 | 7 | 5 | 71.4286 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 88.1791 | 79.5031 | 98.9806 | 34.9542 | 1408 | 363 | 2039 | 21 | 15 | 71.4286 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7451 | 99.7462 | 99.7441 | 40.9924 | 2751 | 7 | 2728 | 7 | 5 | 71.4286 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.9467 | 93.2432 | 96.7136 | 59.8113 | 207 | 15 | 206 | 7 | 5 | 71.4286 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.4015 | 97.3724 | 99.4527 | 70.1934 | 1297 | 35 | 1272 | 7 | 5 | 71.4286 | |
| raldana-dualsentieon | SNP | ti | HG002compoundhet | * | 98.2432 | 96.6243 | 99.9172 | 34.4311 | 16888 | 590 | 16889 | 14 | 10 | 71.4286 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m2_e1 | het | 76.0958 | 77.0370 | 75.1773 | 80.9202 | 104 | 31 | 106 | 35 | 25 | 71.4286 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e0 | * | 67.7170 | 59.7561 | 78.1250 | 86.7769 | 49 | 33 | 50 | 14 | 10 | 71.4286 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e1 | * | 68.1223 | 60.0000 | 78.7879 | 86.7735 | 51 | 34 | 52 | 14 | 10 | 71.4286 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.0318 | 94.2197 | 95.8580 | 61.6780 | 326 | 20 | 324 | 14 | 10 | 71.4286 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 74.3472 | 92.7273 | 62.0482 | 92.1103 | 102 | 8 | 103 | 63 | 45 | 71.4286 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.7394 | 96.4567 | 99.0566 | 64.0330 | 735 | 27 | 735 | 7 | 5 | 71.4286 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.0678 | 96.6163 | 99.5636 | 56.9165 | 1599 | 56 | 1597 | 7 | 5 | 71.4286 | |
| ndellapenna-hhga | INDEL | * | map_l150_m2_e1 | homalt | 98.5772 | 98.5772 | 98.5772 | 88.8207 | 485 | 7 | 485 | 7 | 5 | 71.4286 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 75.0000 | 92.3077 | 63.1579 | 85.2713 | 12 | 1 | 12 | 7 | 5 | 71.4286 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.8202 | 98.3099 | 99.3359 | 67.6190 | 1047 | 18 | 1047 | 7 | 5 | 71.4286 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e0 | het | 98.2852 | 97.4779 | 99.1060 | 84.2645 | 773 | 20 | 776 | 7 | 5 | 71.4286 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.8914 | 94.3741 | 97.4582 | 84.3416 | 1342 | 80 | 1342 | 35 | 25 | 71.4286 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7292 | 99.5876 | 99.8713 | 60.0265 | 10866 | 45 | 10866 | 14 | 10 | 71.4286 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 80.4268 | 75.9398 | 85.4772 | 80.3586 | 202 | 64 | 206 | 35 | 25 | 71.4286 | |
| anovak-vg | INDEL | D6_15 | map_l150_m0_e0 | het | 77.9618 | 85.0000 | 72.0000 | 93.6869 | 17 | 3 | 18 | 7 | 5 | 71.4286 | |
| anovak-vg | SNP | ti | map_l250_m1_e0 | homalt | 84.7951 | 73.9266 | 99.4103 | 87.1481 | 1188 | 419 | 1180 | 7 | 5 | 71.4286 | |
| anovak-vg | SNP | ti | map_l250_m2_e0 | homalt | 85.1522 | 74.4425 | 99.4611 | 88.0122 | 1302 | 447 | 1292 | 7 | 5 | 71.4286 | |
| anovak-vg | SNP | ti | map_l250_m2_e1 | homalt | 85.1502 | 74.4357 | 99.4681 | 88.0298 | 1319 | 453 | 1309 | 7 | 5 | 71.4286 | |
| anovak-vg | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.6861 | 95.4198 | 95.9538 | 64.2562 | 500 | 24 | 498 | 21 | 15 | 71.4286 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7617 | 99.8940 | 99.6298 | 72.6774 | 1884 | 2 | 1884 | 7 | 5 | 71.4286 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.9530 | 95.0769 | 98.9045 | 23.1047 | 618 | 32 | 632 | 7 | 5 | 71.4286 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 91.7468 | 88.1250 | 95.6790 | 89.0392 | 141 | 19 | 155 | 7 | 5 | 71.4286 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 96.8792 | 96.0199 | 97.7540 | 64.3266 | 579 | 24 | 914 | 21 | 15 | 71.4286 | |
| astatham-gatk | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.7032 | 97.7767 | 99.6475 | 68.5461 | 1979 | 45 | 1979 | 7 | 5 | 71.4286 | |
| astatham-gatk | SNP | tv | map_l150_m1_e0 | homalt | 99.2995 | 98.7836 | 99.8207 | 68.8894 | 3898 | 48 | 3898 | 7 | 5 | 71.4286 | |
| astatham-gatk | SNP | tv | map_l150_m2_e0 | homalt | 99.3231 | 98.8244 | 99.8268 | 71.2518 | 4035 | 48 | 4035 | 7 | 5 | 71.4286 | |
| astatham-gatk | SNP | tv | map_l150_m2_e1 | homalt | 99.3315 | 98.8389 | 99.8290 | 71.2267 | 4086 | 48 | 4086 | 7 | 5 | 71.4286 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.5000 | 98.7469 | 98.2544 | 65.8723 | 394 | 5 | 394 | 7 | 5 | 71.4286 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.4555 | 96.9512 | 97.9651 | 38.5714 | 318 | 10 | 337 | 7 | 5 | 71.4286 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.8792 | 99.4987 | 98.2673 | 65.6463 | 397 | 2 | 397 | 7 | 5 | 71.4286 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.4245 | 96.5596 | 98.3051 | 85.6945 | 421 | 15 | 406 | 7 | 5 | 71.4286 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.6707 | 96.5079 | 98.8618 | 65.9091 | 608 | 22 | 608 | 7 | 5 | 71.4286 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.1344 | 98.2308 | 98.0381 | 71.7207 | 3498 | 63 | 3498 | 70 | 50 | 71.4286 | |
| bgallagher-sentieon | INDEL | I6_15 | map_siren | * | 96.6887 | 95.7377 | 97.6589 | 84.7837 | 292 | 13 | 292 | 7 | 5 | 71.4286 | |
| bgallagher-sentieon | SNP | * | map_l125_m0_e0 | homalt | 99.5370 | 99.2849 | 99.7904 | 67.2503 | 6664 | 48 | 6664 | 14 | 10 | 71.4286 | |
| bgallagher-sentieon | SNP | * | map_l250_m0_e0 | homalt | 98.8067 | 98.7281 | 98.8854 | 91.2693 | 621 | 8 | 621 | 7 | 5 | 71.4286 | |
| bgallagher-sentieon | SNP | tv | map_l150_m1_e0 | homalt | 99.6318 | 99.4425 | 99.8219 | 68.7396 | 3924 | 22 | 3924 | 7 | 5 | 71.4286 | |
| bgallagher-sentieon | SNP | tv | map_l150_m2_e0 | homalt | 99.6442 | 99.4612 | 99.8279 | 71.1244 | 4061 | 22 | 4061 | 7 | 5 | 71.4286 | |
| bgallagher-sentieon | SNP | tv | map_l150_m2_e1 | homalt | 99.6486 | 99.4678 | 99.8301 | 71.0988 | 4112 | 22 | 4112 | 7 | 5 | 71.4286 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 89.0808 | 82.0000 | 97.5000 | 46.5649 | 41 | 9 | 273 | 7 | 5 | 71.4286 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m2_e1 | * | 43.8881 | 34.0206 | 61.8182 | 89.1304 | 33 | 64 | 34 | 21 | 15 | 71.4286 | |
| ciseli-custom | INDEL | I1_5 | segdup | het | 90.6052 | 93.4944 | 87.8893 | 95.0934 | 503 | 35 | 508 | 70 | 50 | 71.4286 | |