PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67551-67600 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 40.0000 | 50.0000 | 33.3333 | 42.3077 | 4 | 4 | 5 | 10 | 7 | 70.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.0574 | 96.7213 | 97.3958 | 75.1053 | 472 | 16 | 748 | 20 | 14 | 70.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 98.1878 | 96.9931 | 99.4123 | 51.7989 | 3387 | 105 | 3383 | 20 | 14 | 70.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 96.2894 | 96.2963 | 96.2825 | 60.4412 | 260 | 10 | 259 | 10 | 7 | 70.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 85.0366 | 86.0656 | 84.0319 | 62.7232 | 420 | 68 | 421 | 80 | 56 | 70.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.0752 | 97.9853 | 98.1651 | 74.8500 | 535 | 11 | 535 | 10 | 7 | 70.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_siren | het | 85.4369 | 89.7959 | 81.4815 | 84.9162 | 44 | 5 | 44 | 10 | 7 | 70.0000 | |
| qzeng-custom | INDEL | I6_15 | HG002compoundhet | hetalt | 81.2263 | 68.6424 | 99.4598 | 26.8379 | 5860 | 2677 | 3682 | 20 | 14 | 70.0000 | |
| qzeng-custom | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.3109 | 99.1991 | 99.4230 | 66.8389 | 1734 | 14 | 1723 | 10 | 7 | 70.0000 | |
| raldana-dualsentieon | SNP | * | map_l125_m0_e0 | homalt | 99.6192 | 99.3892 | 99.8503 | 65.6627 | 6671 | 41 | 6671 | 10 | 7 | 70.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.5510 | 97.1545 | 97.9508 | 60.7085 | 478 | 14 | 478 | 10 | 7 | 70.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m2_e0 | * | 44.1674 | 34.4444 | 61.5385 | 89.4737 | 31 | 59 | 32 | 20 | 14 | 70.0000 | |
| ciseli-custom | INDEL | I1_5 | tech_badpromoters | het | 50.0000 | 75.0000 | 37.5000 | 55.5556 | 6 | 2 | 6 | 10 | 7 | 70.0000 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 45.6848 | 32.5820 | 76.4151 | 81.0545 | 159 | 329 | 162 | 50 | 35 | 70.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.9933 | 95.8333 | 96.1538 | 80.5097 | 276 | 12 | 250 | 10 | 7 | 70.0000 | |
| ckim-gatk | SNP | * | map_l100_m1_e0 | homalt | 83.6574 | 71.9327 | 99.9485 | 66.2938 | 19424 | 7579 | 19424 | 10 | 7 | 70.0000 | |
| cchapple-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.8562 | 99.7624 | 99.9502 | 47.5635 | 20151 | 48 | 20069 | 10 | 7 | 70.0000 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.7240 | 89.4737 | 98.3983 | 44.3222 | 663 | 78 | 1843 | 30 | 21 | 70.0000 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7531 | 99.6254 | 99.8811 | 52.9851 | 25264 | 95 | 25209 | 30 | 21 | 70.0000 | |
| jpowers-varprowl | INDEL | * | map_l125_m1_e0 | * | 93.0277 | 91.5045 | 94.6026 | 87.5701 | 1928 | 179 | 1928 | 110 | 77 | 70.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8164 | 99.6914 | 99.9417 | 52.6220 | 17124 | 53 | 17138 | 10 | 7 | 70.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7742 | 99.6391 | 99.9096 | 52.3779 | 11044 | 40 | 11055 | 10 | 7 | 70.0000 | |
| ltrigg-rtg2 | INDEL | * | map_siren | homalt | 98.9758 | 98.3427 | 99.6172 | 74.6678 | 2611 | 44 | 2602 | 10 | 7 | 70.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 96.0206 | 93.2787 | 98.9286 | 61.7804 | 4663 | 336 | 4617 | 50 | 35 | 70.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 96.0206 | 93.2787 | 98.9286 | 61.7804 | 4663 | 336 | 4617 | 50 | 35 | 70.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 85.9444 | 77.0743 | 97.1216 | 57.5074 | 14073 | 4186 | 14070 | 417 | 292 | 70.0240 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 60.8751 | 59.9982 | 61.7781 | 66.5944 | 39207 | 26140 | 39525 | 24454 | 17134 | 70.0662 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 60.8751 | 59.9982 | 61.7781 | 66.5944 | 39207 | 26140 | 39525 | 24454 | 17134 | 70.0662 | |
| ndellapenna-hhga | INDEL | I16_PLUS | * | homalt | 94.0659 | 94.8751 | 93.2704 | 61.1057 | 1481 | 80 | 1483 | 107 | 75 | 70.0935 | |
| raldana-dualsentieon | INDEL | D1_5 | * | het | 99.5220 | 99.2680 | 99.7773 | 56.3227 | 86933 | 641 | 86937 | 194 | 136 | 70.1031 | |
| jpowers-varprowl | INDEL | D1_5 | map_l100_m1_e0 | het | 94.3765 | 95.7816 | 93.0120 | 85.5736 | 1158 | 51 | 1158 | 87 | 61 | 70.1149 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.2285 | 93.2851 | 97.2547 | 53.8987 | 903 | 65 | 3082 | 87 | 61 | 70.1149 | |
| anovak-vg | INDEL | * | HG002compoundhet | het | 52.7411 | 50.6595 | 55.0010 | 54.9014 | 2074 | 2020 | 13874 | 11351 | 7959 | 70.1172 | |
| eyeh-varpipe | INDEL | D1_5 | * | het | 98.8729 | 98.5350 | 99.2132 | 51.9513 | 86291 | 1283 | 85238 | 676 | 474 | 70.1183 | |
| mlin-fermikit | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.8660 | 97.7360 | 97.9964 | 54.8200 | 27326 | 633 | 27341 | 559 | 392 | 70.1252 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 82.4185 | 78.1955 | 87.1237 | 60.0801 | 104 | 29 | 521 | 77 | 54 | 70.1299 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 89.6438 | 88.9452 | 90.3535 | 42.9428 | 33712 | 4190 | 54335 | 5801 | 4069 | 70.1431 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 78.7955 | 87.4652 | 71.6895 | 43.9898 | 314 | 45 | 314 | 124 | 87 | 70.1613 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 81.4087 | 70.0526 | 97.1590 | 70.4588 | 12379 | 5292 | 12380 | 362 | 254 | 70.1657 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 81.4087 | 70.0526 | 97.1590 | 70.4588 | 12379 | 5292 | 12380 | 362 | 254 | 70.1657 | |
| jpowers-varprowl | SNP | tv | map_l100_m2_e0 | homalt | 99.1460 | 98.9147 | 99.3785 | 68.5946 | 9114 | 100 | 9114 | 57 | 40 | 70.1754 | |
| cchapple-custom | SNP | tv | HG002complexvar | * | 99.7805 | 99.6506 | 99.9108 | 21.2813 | 245292 | 860 | 244113 | 218 | 153 | 70.1835 | |
| hfeng-pmm1 | INDEL | I1_5 | * | * | 99.5147 | 99.2699 | 99.7606 | 57.3300 | 149564 | 1100 | 149609 | 359 | 252 | 70.1950 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 63.7080 | 51.7647 | 82.8154 | 52.5585 | 440 | 410 | 453 | 94 | 66 | 70.2128 | |
| qzeng-custom | INDEL | D1_5 | * | * | 98.2982 | 97.8575 | 98.7428 | 57.2067 | 143601 | 3144 | 144677 | 1842 | 1294 | 70.2497 | |
| ciseli-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 45.1864 | 43.7705 | 46.6970 | 66.0012 | 4409 | 5664 | 4517 | 5156 | 3623 | 70.2676 | |
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 76.2734 | 94.2029 | 64.0777 | 91.7797 | 65 | 4 | 66 | 37 | 26 | 70.2703 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 44.8523 | 34.5009 | 64.0777 | 67.1975 | 197 | 374 | 198 | 111 | 78 | 70.2703 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.3204 | 98.9679 | 99.6754 | 59.9358 | 19657 | 205 | 19650 | 64 | 45 | 70.3125 | |
| anovak-vg | INDEL | D16_PLUS | HG002complexvar | * | 63.7181 | 53.0736 | 79.7034 | 53.6711 | 872 | 771 | 860 | 219 | 154 | 70.3196 | |