PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67001-67050 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m2_e1 | * | 94.6730 | 92.9412 | 96.4706 | 91.2281 | 79 | 6 | 82 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 73.7885 | 60.4651 | 94.6429 | 73.7089 | 52 | 34 | 53 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 86.1423 | 94.2623 | 79.3103 | 80.9461 | 115 | 7 | 115 | 30 | 20 | 66.6667 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 72.0994 | 59.3220 | 91.8919 | 66.9643 | 35 | 24 | 34 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 91.4286 | 100.0000 | 84.2105 | 82.0755 | 15 | 0 | 16 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m1_e0 | het | 83.3333 | 83.3333 | 83.3333 | 86.8613 | 15 | 3 | 15 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e0 | het | 83.3333 | 83.3333 | 83.3333 | 89.0909 | 15 | 3 | 15 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e1 | het | 83.3333 | 83.3333 | 83.3333 | 89.2857 | 15 | 3 | 15 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_siren | homalt | 73.6842 | 66.6667 | 82.3529 | 88.5135 | 14 | 7 | 14 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.5124 | 98.0000 | 97.0297 | 66.3894 | 196 | 4 | 196 | 6 | 4 | 66.6667 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 82.8938 | 71.8447 | 97.9592 | 42.5781 | 148 | 58 | 144 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m1_e0 | * | 95.0673 | 92.9825 | 97.2477 | 85.4473 | 106 | 8 | 106 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m1_e0 | het | 94.9153 | 94.9153 | 94.9153 | 85.9189 | 56 | 3 | 56 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m2_e0 | * | 95.1542 | 93.1034 | 97.2973 | 86.5942 | 108 | 8 | 108 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m2_e0 | het | 95.0820 | 95.0820 | 95.0820 | 86.6812 | 58 | 3 | 58 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m2_e1 | het | 95.0820 | 95.0820 | 95.0820 | 86.8817 | 58 | 3 | 58 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.7512 | 99.6892 | 99.8133 | 54.3984 | 1604 | 5 | 1604 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7605 | 99.6030 | 99.9185 | 55.4188 | 11040 | 44 | 11040 | 9 | 6 | 66.6667 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.2994 | 98.9826 | 99.6182 | 37.5156 | 17998 | 185 | 18004 | 69 | 46 | 66.6667 | |
| rpoplin-dv42 | INDEL | D16_PLUS | HG002complexvar | homalt | 98.6111 | 98.2699 | 98.9547 | 72.7704 | 284 | 5 | 284 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.7083 | 96.1066 | 99.3644 | 68.5333 | 469 | 19 | 469 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3915 | 99.3915 | 99.3915 | 54.5622 | 490 | 3 | 490 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.0530 | 95.3668 | 98.8000 | 56.7474 | 247 | 12 | 247 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4057 | 99.7831 | 99.0312 | 77.4842 | 920 | 2 | 920 | 9 | 6 | 66.6667 | |
| rpoplin-dv42 | INDEL | D6_15 | HG002complexvar | homalt | 99.3561 | 98.9735 | 99.7416 | 60.7903 | 1157 | 12 | 1158 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.1559 | 98.4882 | 99.8328 | 57.1769 | 3583 | 55 | 3583 | 6 | 4 | 66.6667 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.7013 | 98.9583 | 98.4456 | 43.0678 | 190 | 2 | 190 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_siren | * | 91.4854 | 87.2093 | 96.2025 | 77.4929 | 75 | 11 | 76 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.9305 | 94.9367 | 99.0099 | 74.3003 | 300 | 16 | 300 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.0431 | 99.5192 | 98.5714 | 80.9264 | 207 | 1 | 207 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m1_e0 | het | 98.3792 | 97.5547 | 99.2177 | 83.0610 | 758 | 19 | 761 | 6 | 4 | 66.6667 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m1_e0 | het | 98.1263 | 96.9136 | 99.3697 | 85.6928 | 471 | 15 | 473 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m2_e0 | het | 98.0644 | 96.7807 | 99.3827 | 86.9285 | 481 | 16 | 483 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m2_e1 | het | 98.1069 | 96.8504 | 99.3964 | 86.9861 | 492 | 16 | 494 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 97.7062 | 96.6942 | 98.7395 | 67.2176 | 234 | 8 | 235 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 97.5410 | 97.5410 | 97.5410 | 68.6375 | 119 | 3 | 119 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m1_e0 | * | 93.1507 | 89.4737 | 97.1429 | 84.5133 | 102 | 12 | 102 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m2_e0 | * | 93.2735 | 89.6552 | 97.1963 | 85.5014 | 104 | 12 | 104 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m2_e1 | * | 93.2735 | 89.6552 | 97.1963 | 85.8466 | 104 | 12 | 104 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m1_e0 | * | 88.0000 | 83.0189 | 93.6170 | 89.3905 | 44 | 9 | 44 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m2_e0 | * | 88.0000 | 83.0189 | 93.6170 | 90.5242 | 44 | 9 | 44 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m2_e1 | * | 88.0000 | 83.0189 | 93.6170 | 90.8382 | 44 | 9 | 44 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.5049 | 92.7033 | 98.4810 | 62.0192 | 775 | 61 | 778 | 12 | 8 | 66.6667 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.5935 | 97.6182 | 99.5885 | 50.6933 | 2910 | 71 | 2904 | 12 | 8 | 66.6667 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_siren | * | 96.2876 | 93.7705 | 98.9437 | 78.2708 | 286 | 19 | 281 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | SNP | tv | map_siren | homalt | 99.8781 | 99.7912 | 99.9651 | 52.8102 | 17204 | 36 | 17198 | 6 | 4 | 66.6667 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 80.0000 | 83.3333 | 76.9231 | 99.2709 | 10 | 2 | 10 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 81.8182 | 90.0000 | 75.0000 | 99.2945 | 9 | 1 | 9 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.9241 | 99.9133 | 99.9349 | 33.6595 | 4612 | 4 | 4607 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 98.1787 | 97.7376 | 98.6239 | 91.0177 | 216 | 5 | 215 | 3 | 2 | 66.6667 | |