PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
66901-66950 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.2098 | 99.0971 | 99.3228 | 35.3285 | 439 | 4 | 440 | 3 | 2 | 66.6667 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e1 | het | 94.2427 | 98.5185 | 90.3226 | 87.0184 | 133 | 2 | 140 | 15 | 10 | 66.6667 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 72.8872 | 59.3023 | 94.5455 | 73.4300 | 51 | 35 | 52 | 3 | 2 | 66.6667 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 72.0994 | 59.3220 | 91.8919 | 66.3636 | 35 | 24 | 34 | 3 | 2 | 66.6667 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 85.0000 | 0 | 1 | 0 | 6 | 4 | 66.6667 | ||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 82.2869 | 90.1639 | 75.6757 | 84.0173 | 55 | 6 | 56 | 18 | 12 | 66.6667 | |
| egarrison-hhga | INDEL | I16_PLUS | map_siren | homalt | 76.9231 | 71.4286 | 83.3333 | 85.1240 | 15 | 6 | 15 | 3 | 2 | 66.6667 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.6237 | 97.0597 | 98.1943 | 69.6107 | 3433 | 104 | 3426 | 63 | 42 | 66.6667 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.5232 | 97.6987 | 99.3617 | 74.5533 | 467 | 11 | 467 | 3 | 2 | 66.6667 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.0420 | 87.8244 | 94.5043 | 58.5344 | 880 | 122 | 877 | 51 | 34 | 66.6667 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 89.9659 | 85.8300 | 94.5205 | 76.9716 | 212 | 35 | 207 | 12 | 8 | 66.6667 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 90.0691 | 91.5033 | 88.6792 | 75.9091 | 140 | 13 | 141 | 18 | 12 | 66.6667 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m2_e1 | * | 94.6903 | 92.2414 | 97.2727 | 85.9335 | 107 | 9 | 107 | 3 | 2 | 66.6667 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 96.4383 | 94.0202 | 98.9840 | 57.6608 | 2044 | 130 | 2046 | 21 | 14 | 66.6667 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 89.8495 | 82.0513 | 99.2857 | 77.1491 | 416 | 91 | 417 | 3 | 2 | 66.6667 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3521 | 100.0000 | 98.7124 | 72.0288 | 230 | 0 | 230 | 3 | 2 | 66.6667 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.9065 | 89.6373 | 94.2935 | 88.6839 | 346 | 40 | 347 | 21 | 14 | 66.6667 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 81.8937 | 73.5294 | 92.4051 | 90.6509 | 75 | 27 | 73 | 6 | 4 | 66.6667 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8153 | 99.7048 | 99.9260 | 44.7261 | 4053 | 12 | 4053 | 3 | 2 | 66.6667 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.4177 | 99.1702 | 99.6664 | 74.8848 | 5378 | 45 | 5377 | 18 | 12 | 66.6667 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.7911 | 98.1976 | 99.3919 | 80.6257 | 1471 | 27 | 1471 | 9 | 6 | 66.6667 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.4177 | 99.1702 | 99.6664 | 74.8848 | 5378 | 45 | 5377 | 18 | 12 | 66.6667 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.2342 | 98.9813 | 99.4883 | 56.1128 | 1749 | 18 | 1750 | 9 | 6 | 66.6667 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 86.0759 | 80.9524 | 91.8919 | 88.7195 | 34 | 8 | 34 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | * | decoy | het | 63.4921 | 50.0000 | 86.9565 | 99.7259 | 3 | 3 | 20 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 3.1209 | 1.5974 | 67.3913 | 86.5889 | 20 | 1232 | 31 | 15 | 10 | 66.6667 | |
| eyeh-varpipe | INDEL | * | map_l100_m0_e0 | hetalt | 58.2726 | 42.4242 | 93.0233 | 93.1746 | 14 | 19 | 40 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | * | map_l100_m1_e0 | het | 96.1706 | 95.7494 | 96.5955 | 81.6758 | 2140 | 95 | 2894 | 102 | 68 | 66.6667 | |
| eyeh-varpipe | INDEL | * | map_l250_m2_e0 | * | 96.1728 | 96.0725 | 96.2733 | 98.1347 | 318 | 13 | 465 | 18 | 12 | 66.6667 | |
| eyeh-varpipe | INDEL | * | map_l250_m2_e1 | * | 96.1961 | 96.0961 | 96.2963 | 98.2219 | 320 | 13 | 468 | 18 | 12 | 66.6667 | |
| eyeh-varpipe | INDEL | C16_PLUS | HG002complexvar | hetalt | 0.0000 | 0.0000 | 66.6667 | 93.2331 | 0 | 0 | 6 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 40.0000 | 94.1349 | 0 | 0 | 8 | 12 | 8 | 66.6667 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 40.0000 | 92.4242 | 0 | 0 | 6 | 9 | 6 | 66.6667 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 70.0000 | 92.5373 | 0 | 0 | 7 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | C1_5 | HG002complexvar | het | 91.4751 | 85.7143 | 98.0661 | 74.9495 | 6 | 1 | 1217 | 24 | 16 | 66.6667 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 70.0000 | 93.8272 | 0 | 0 | 7 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 94.2308 | 0 | 0 | 0 | 3 | 2 | 66.6667 | ||
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 33.3333 | 91.2621 | 0 | 0 | 3 | 6 | 4 | 66.6667 | |
| eyeh-varpipe | INDEL | C6_15 | HG002compoundhet | het | 0.0000 | 0.0000 | 97.7444 | 0 | 0 | 0 | 3 | 2 | 66.6667 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 93.6170 | 100.0000 | 88.0000 | 95.8882 | 1 | 0 | 44 | 6 | 4 | 66.6667 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 66.6667 | 92.8571 | 0 | 0 | 6 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 33.3333 | 94.2060 | 0 | 0 | 18 | 36 | 24 | 66.6667 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 88.4615 | 0 | 0 | 0 | 12 | 8 | 66.6667 | ||
| ckim-vqsr | INDEL | D1_5 | map_l100_m0_e0 | homalt | 99.0329 | 99.2248 | 98.8417 | 84.1880 | 256 | 2 | 256 | 3 | 2 | 66.6667 | |
| ckim-vqsr | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.3232 | 99.1554 | 99.4915 | 83.5517 | 587 | 5 | 587 | 3 | 2 | 66.6667 | |
| ckim-vqsr | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.3443 | 99.1817 | 99.5074 | 84.1571 | 606 | 5 | 606 | 3 | 2 | 66.6667 | |
| ckim-vqsr | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.3538 | 99.1935 | 99.5146 | 84.2025 | 615 | 5 | 615 | 3 | 2 | 66.6667 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.2332 | 96.8504 | 97.6190 | 80.0633 | 123 | 4 | 123 | 3 | 2 | 66.6667 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5517 | 99.4030 | 99.7009 | 66.4548 | 999 | 6 | 1000 | 3 | 2 | 66.6667 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5944 | 99.5365 | 99.6524 | 64.2502 | 859 | 4 | 860 | 3 | 2 | 66.6667 | |