PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
66651-66700 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | D6_15 | map_siren | homalt | 98.0843 | 98.4615 | 97.7099 | 81.5752 | 128 | 2 | 128 | 3 | 2 | 66.6667 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.7681 | 90.2913 | 95.3846 | 88.0074 | 186 | 20 | 186 | 9 | 6 | 66.6667 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 95.3650 | 91.5952 | 99.4585 | 65.4829 | 534 | 49 | 551 | 3 | 2 | 66.6667 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.0282 | 97.7528 | 98.3051 | 80.7818 | 174 | 4 | 174 | 3 | 2 | 66.6667 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 87.9518 | 83.9080 | 92.4051 | 83.8776 | 73 | 14 | 73 | 6 | 4 | 66.6667 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.2669 | 96.0317 | 98.5342 | 65.6983 | 605 | 25 | 605 | 9 | 6 | 66.6667 | |
| jlack-gatk | INDEL | I1_5 | map_l250_m1_e0 | homalt | 96.7033 | 100.0000 | 93.6170 | 94.0806 | 44 | 0 | 44 | 3 | 2 | 66.6667 | |
| jlack-gatk | INDEL | I1_5 | map_l250_m2_e0 | homalt | 96.7742 | 100.0000 | 93.7500 | 94.8990 | 45 | 0 | 45 | 3 | 2 | 66.6667 | |
| jlack-gatk | INDEL | I1_5 | map_l250_m2_e1 | homalt | 96.8421 | 100.0000 | 93.8776 | 94.8905 | 46 | 0 | 46 | 3 | 2 | 66.6667 | |
| jlack-gatk | SNP | * | map_siren | homalt | 99.6008 | 99.2857 | 99.9179 | 50.5286 | 54762 | 394 | 54753 | 45 | 30 | 66.6667 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.1927 | 91.2096 | 99.5395 | 87.2592 | 1297 | 125 | 1297 | 6 | 4 | 66.6667 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 92.8280 | 87.1851 | 99.2519 | 87.9706 | 796 | 117 | 796 | 6 | 4 | 66.6667 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.0979 | 96.4062 | 99.8501 | 81.6005 | 3997 | 149 | 3997 | 6 | 4 | 66.6667 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.1484 | 94.6692 | 99.7610 | 81.1745 | 2504 | 141 | 2504 | 6 | 4 | 66.6667 | |
| hfeng-pmm2 | INDEL | * | map_l125_m1_e0 | homalt | 99.3179 | 99.4536 | 99.1826 | 84.3929 | 728 | 4 | 728 | 6 | 4 | 66.6667 | |
| hfeng-pmm2 | INDEL | * | map_l150_m2_e1 | homalt | 98.9858 | 99.1870 | 98.7854 | 88.2938 | 488 | 4 | 488 | 6 | 4 | 66.6667 | |
| hfeng-pmm2 | INDEL | D16_PLUS | * | homalt | 99.0257 | 99.1135 | 98.9381 | 67.4789 | 1677 | 15 | 1677 | 18 | 12 | 66.6667 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.8162 | 96.8548 | 98.7969 | 68.2925 | 3449 | 112 | 3449 | 42 | 28 | 66.6667 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.6805 | 98.7990 | 98.5623 | 71.8841 | 1234 | 15 | 1234 | 18 | 12 | 66.6667 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.6805 | 98.7990 | 98.5623 | 71.8841 | 1234 | 15 | 1234 | 18 | 12 | 66.6667 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 94.3762 | 93.4319 | 95.3398 | 81.6399 | 569 | 40 | 491 | 24 | 16 | 66.6667 | |
| hfeng-pmm2 | INDEL | D1_5 | HG002complexvar | het | 98.9180 | 97.9581 | 99.8969 | 54.5187 | 20341 | 424 | 20346 | 21 | 14 | 66.6667 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.5946 | 93.3333 | 95.8904 | 61.3757 | 70 | 5 | 70 | 3 | 2 | 66.6667 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3610 | 99.0730 | 99.6508 | 61.9238 | 855 | 8 | 856 | 3 | 2 | 66.6667 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.8169 | 93.8695 | 99.9554 | 27.7467 | 6676 | 436 | 6718 | 3 | 2 | 66.6667 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.8082 | 93.8528 | 99.9557 | 28.4115 | 6733 | 441 | 6775 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 97.6378 | 97.6378 | 97.6378 | 48.9960 | 124 | 3 | 124 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 80.8789 | 71.8519 | 92.5000 | 74.9216 | 97 | 38 | 74 | 6 | 4 | 66.6667 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.8776 | 92.0000 | 95.8333 | 60.4396 | 69 | 6 | 69 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | D6_15 | * | hetalt | 97.0865 | 94.3724 | 99.9614 | 34.0075 | 7714 | 460 | 7763 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.0437 | 94.2921 | 99.9608 | 30.2580 | 7599 | 460 | 7647 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.0437 | 94.2921 | 99.9608 | 30.2580 | 7599 | 460 | 7647 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.0579 | 95.3612 | 98.8161 | 48.1800 | 1254 | 61 | 1252 | 15 | 10 | 66.6667 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.4967 | 94.8485 | 96.1538 | 71.6106 | 313 | 17 | 300 | 12 | 8 | 66.6667 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3905 | 98.9595 | 99.8252 | 33.0994 | 1712 | 18 | 1713 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.9986 | 98.4353 | 99.5683 | 42.5145 | 692 | 11 | 692 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | I16_PLUS | HG002compoundhet | het | 88.6756 | 89.3617 | 88.0000 | 93.8725 | 42 | 5 | 22 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 94.3396 | 100.0000 | 89.2857 | 92.1127 | 25 | 0 | 25 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 40.0000 | 100.0000 | 25.0000 | 92.7273 | 1 | 0 | 1 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 95.7835 | 93.2367 | 98.4733 | 73.1190 | 386 | 28 | 387 | 6 | 4 | 66.6667 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.8185 | 95.8304 | 99.8909 | 57.5027 | 5493 | 239 | 5494 | 6 | 4 | 66.6667 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.4242 | 100.0000 | 98.8550 | 79.6188 | 518 | 0 | 518 | 6 | 4 | 66.6667 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.4382 | 100.0000 | 98.8827 | 81.1975 | 531 | 0 | 531 | 6 | 4 | 66.6667 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.4475 | 100.0000 | 98.9011 | 81.3078 | 540 | 0 | 540 | 6 | 4 | 66.6667 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 84.2530 | 114 | 0 | 114 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.5434 | 100.0000 | 99.0909 | 82.1429 | 327 | 0 | 327 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.5620 | 100.0000 | 99.1279 | 83.6268 | 341 | 0 | 341 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.5646 | 100.0000 | 99.1329 | 83.9219 | 343 | 0 | 343 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m1_e0 | homalt | 99.2481 | 100.0000 | 98.5075 | 85.7548 | 198 | 0 | 198 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.2593 | 100.0000 | 98.5294 | 87.5686 | 201 | 0 | 201 | 3 | 2 | 66.6667 | |