PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
66551-66600 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3521 | 100.0000 | 98.7124 | 71.7576 | 230 | 0 | 230 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.7833 | 99.8915 | 99.6753 | 78.2895 | 921 | 1 | 921 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.1071 | 92.9674 | 99.4662 | 64.2038 | 542 | 41 | 559 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 40.0000 | 100.0000 | 25.0000 | 93.6508 | 1 | 0 | 1 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 93.7471 | 93.6170 | 93.8776 | 80.9339 | 44 | 3 | 46 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4479 | 99.1196 | 99.7784 | 77.4446 | 1351 | 12 | 1351 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.9052 | 93.4028 | 96.4567 | 80.9738 | 269 | 19 | 245 | 9 | 6 | 66.6667 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.4573 | 97.8921 | 99.0291 | 73.9064 | 1579 | 34 | 1530 | 15 | 10 | 66.6667 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.2047 | 98.8739 | 99.5378 | 72.9132 | 1317 | 15 | 1292 | 6 | 4 | 66.6667 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.3310 | 99.4624 | 99.2000 | 83.9812 | 370 | 2 | 372 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_siren | homalt | 99.7001 | 99.6575 | 99.7427 | 77.3460 | 1164 | 4 | 1163 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.5520 | 95.8237 | 99.3437 | 50.3216 | 16933 | 738 | 16803 | 111 | 74 | 66.6667 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.5520 | 95.8237 | 99.3437 | 50.3216 | 16933 | 738 | 16803 | 111 | 74 | 66.6667 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | HG002complexvar | het | 91.1805 | 84.2105 | 99.4083 | 47.5155 | 560 | 105 | 504 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 75.2837 | 62.1359 | 95.4887 | 76.4184 | 128 | 78 | 127 | 6 | 4 | 66.6667 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 73.8028 | 60.1852 | 95.3846 | 71.2389 | 65 | 43 | 62 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 76.7667 | 64.3678 | 95.0820 | 76.8939 | 56 | 31 | 58 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.4898 | 99.2366 | 99.7443 | 67.0997 | 3510 | 27 | 3511 | 9 | 6 | 66.6667 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.6024 | 95.6055 | 99.6844 | 50.8784 | 2850 | 131 | 2843 | 9 | 6 | 66.6667 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_siren | * | 95.4449 | 93.1148 | 97.8947 | 78.4743 | 284 | 21 | 279 | 6 | 4 | 66.6667 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 89.8442 | 86.3636 | 93.6170 | 94.7486 | 57 | 9 | 44 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8453 | 100.0000 | 99.6910 | 64.2357 | 968 | 0 | 968 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 85.4478 | 114 | 0 | 114 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.2366 | 99.3884 | 99.0854 | 83.4677 | 325 | 2 | 325 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.2679 | 99.4135 | 99.1228 | 84.7048 | 339 | 2 | 339 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.2722 | 99.4169 | 99.1279 | 84.8990 | 341 | 2 | 341 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m1_e0 | homalt | 98.7406 | 98.9899 | 98.4925 | 87.1030 | 196 | 2 | 196 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m2_e0 | homalt | 98.7593 | 99.0050 | 98.5149 | 88.5292 | 199 | 2 | 199 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m2_e1 | homalt | 98.7775 | 99.0196 | 98.5366 | 88.5921 | 202 | 2 | 202 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I6_15 | * | hetalt | 95.7466 | 91.8723 | 99.9620 | 36.0612 | 7856 | 695 | 7896 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 94.4606 | 91.0112 | 98.1818 | 72.8171 | 162 | 16 | 162 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.2260 | 98.0100 | 98.4429 | 73.1662 | 591 | 12 | 569 | 9 | 6 | 66.6667 | |
| jmaeng-gatk | SNP | * | map_siren | hetalt | 88.0000 | 81.4815 | 95.6522 | 83.0882 | 66 | 15 | 66 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.2650 | 98.9969 | 99.5345 | 87.4939 | 1283 | 13 | 1283 | 6 | 4 | 66.6667 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 99.1765 | 99.0599 | 99.2933 | 88.5872 | 843 | 8 | 843 | 6 | 4 | 66.6667 | |
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 96.6154 | 95.1515 | 98.1250 | 91.0814 | 157 | 8 | 157 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.3265 | 95.1613 | 97.5207 | 90.8055 | 118 | 6 | 118 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | SNP | tv | map_siren | hetalt | 88.0000 | 81.4815 | 95.6522 | 83.0882 | 66 | 15 | 66 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 14.8148 | 8.5106 | 57.1429 | 80.5556 | 4 | 43 | 4 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | * | map_l100_m1_e0 | homalt | 95.3105 | 91.9315 | 98.9474 | 78.3927 | 1128 | 99 | 1128 | 12 | 8 | 66.6667 | |
| jpowers-varprowl | INDEL | * | map_l150_m0_e0 | * | 92.9134 | 91.8288 | 94.0239 | 93.2052 | 472 | 42 | 472 | 30 | 20 | 66.6667 | |
| jpowers-varprowl | INDEL | * | map_l150_m0_e0 | het | 93.0233 | 93.8416 | 92.2190 | 93.9442 | 320 | 21 | 320 | 27 | 18 | 66.6667 | |
| jpowers-varprowl | INDEL | * | map_l150_m0_e0 | homalt | 95.2978 | 92.6829 | 98.0645 | 90.6514 | 152 | 12 | 152 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | * | map_l150_m2_e1 | homalt | 95.1579 | 91.8699 | 98.6900 | 87.1240 | 452 | 40 | 452 | 6 | 4 | 66.6667 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 92.0000 | 95.4463 | 0 | 0 | 69 | 6 | 4 | 66.6667 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 66.6667 | 97.6684 | 0 | 0 | 6 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 78.5714 | 96.2766 | 0 | 0 | 11 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 89.6552 | 95.8865 | 0 | 0 | 26 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 78.5714 | 96.2766 | 0 | 0 | 11 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | C6_15 | * | hetalt | 0.0000 | 0.0000 | 98.1132 | 93.2138 | 0 | 0 | 156 | 3 | 2 | 66.6667 | |