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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
66501-66550 / 86044 show all | |||||||||||||||
| astatham-gatk | SNP | tv | map_l125_m2_e1 | homalt | 99.4462 | 99.0451 | 99.8506 | 66.8391 | 6016 | 58 | 6016 | 9 | 6 | 66.6667 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.1647 | 97.6017 | 98.7342 | 72.8055 | 936 | 23 | 936 | 12 | 8 | 66.6667 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.6957 | 98.6957 | 98.6957 | 72.7488 | 227 | 3 | 227 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3521 | 100.0000 | 98.7124 | 72.0958 | 230 | 0 | 230 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8303 | 99.7319 | 99.9289 | 55.1102 | 25291 | 68 | 25294 | 18 | 12 | 66.6667 | |
| astatham-gatk | INDEL | D1_5 | map_l100_m0_e0 | homalt | 99.2278 | 99.6124 | 98.8462 | 83.9208 | 257 | 1 | 257 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.4932 | 99.4932 | 99.4932 | 83.1098 | 589 | 3 | 589 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.5090 | 99.5090 | 99.5090 | 83.7888 | 608 | 3 | 608 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.5161 | 99.5161 | 99.5161 | 83.8500 | 617 | 3 | 617 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.2332 | 96.8504 | 97.6190 | 78.9649 | 123 | 4 | 123 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5517 | 99.4030 | 99.7009 | 65.6624 | 999 | 6 | 1000 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5944 | 99.5365 | 99.6524 | 63.5095 | 859 | 4 | 860 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.0437 | 98.7072 | 99.3825 | 75.7366 | 6337 | 83 | 6277 | 39 | 26 | 66.6667 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 99.0437 | 98.7072 | 99.3825 | 75.7366 | 6337 | 83 | 6277 | 39 | 26 | 66.6667 | |
| astatham-gatk | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 85.4478 | 114 | 0 | 114 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.5434 | 100.0000 | 99.0909 | 83.2146 | 327 | 0 | 327 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.5620 | 100.0000 | 99.1279 | 84.4625 | 341 | 0 | 341 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.5646 | 100.0000 | 99.1329 | 84.6970 | 343 | 0 | 343 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m0_e0 | * | 96.8349 | 95.4545 | 98.2558 | 92.5054 | 168 | 8 | 169 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m1_e0 | homalt | 99.2481 | 100.0000 | 98.5075 | 86.7676 | 198 | 0 | 198 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.2593 | 100.0000 | 98.5294 | 88.3095 | 201 | 0 | 201 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.2701 | 100.0000 | 98.5507 | 88.3838 | 204 | 0 | 204 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | I1_5 | map_siren | homalt | 99.6711 | 99.8350 | 99.5078 | 78.3135 | 1210 | 2 | 1213 | 6 | 4 | 66.6667 | |
| astatham-gatk | INDEL | I6_15 | map_siren | * | 95.6376 | 93.4426 | 97.9381 | 85.2956 | 285 | 20 | 285 | 6 | 4 | 66.6667 | |
| jpowers-varprowl | SNP | * | map_l150_m1_e0 | homalt | 98.9052 | 98.1726 | 99.6488 | 74.4202 | 11067 | 206 | 11067 | 39 | 26 | 66.6667 | |
| jpowers-varprowl | SNP | * | map_l150_m2_e0 | homalt | 98.9410 | 98.2306 | 99.6618 | 76.3825 | 11492 | 207 | 11492 | 39 | 26 | 66.6667 | |
| jpowers-varprowl | SNP | * | map_l150_m2_e1 | homalt | 98.9483 | 98.2413 | 99.6655 | 76.3898 | 11619 | 208 | 11619 | 39 | 26 | 66.6667 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.5482 | 99.9091 | 99.1899 | 44.8772 | 2199 | 2 | 2204 | 18 | 12 | 66.6667 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.0596 | 99.8095 | 98.3209 | 76.9759 | 524 | 1 | 527 | 9 | 6 | 66.6667 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.2022 | 100.0000 | 96.4680 | 43.7034 | 1311 | 0 | 1311 | 48 | 32 | 66.6667 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 88.0000 | 96.2853 | 0 | 0 | 22 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 66.6667 | 97.7941 | 0 | 0 | 6 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 78.5714 | 96.3918 | 0 | 0 | 11 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 89.6552 | 95.9778 | 0 | 0 | 26 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 78.5714 | 96.3918 | 0 | 0 | 11 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | C6_15 | * | hetalt | 0.0000 | 0.0000 | 97.9452 | 93.5654 | 0 | 0 | 143 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 97.7778 | 86.8677 | 0 | 0 | 132 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 95.8904 | 95.3115 | 0 | 0 | 70 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 95.8904 | 95.3115 | 0 | 0 | 70 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.6515 | 97.6942 | 99.6278 | 64.7727 | 805 | 19 | 803 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.2859 | 92.6829 | 98.0392 | 77.6316 | 152 | 12 | 150 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m1_e0 | * | 82.3529 | 77.7778 | 87.5000 | 98.2621 | 21 | 6 | 21 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m1_e0 | het | 87.8049 | 90.0000 | 85.7143 | 97.5917 | 18 | 2 | 18 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m2_e0 | * | 82.3529 | 77.7778 | 87.5000 | 98.3075 | 21 | 6 | 21 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m2_e0 | het | 87.8049 | 90.0000 | 85.7143 | 97.6770 | 18 | 2 | 18 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m2_e1 | * | 80.7692 | 75.0000 | 87.5000 | 98.3146 | 21 | 7 | 21 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m2_e1 | het | 87.8049 | 90.0000 | 85.7143 | 97.6923 | 18 | 2 | 18 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 90.2235 | 84.1085 | 97.2973 | 60.5684 | 217 | 41 | 216 | 6 | 4 | 66.6667 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m0_e0 | * | 94.3709 | 91.9355 | 96.9388 | 89.0052 | 285 | 25 | 285 | 9 | 6 | 66.6667 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.3742 | 99.4987 | 99.2500 | 65.9284 | 397 | 2 | 397 | 3 | 2 | 66.6667 | |