PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
65951-66000 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 96.2295 | 95.0044 | 97.4865 | 79.8699 | 1084 | 57 | 1086 | 28 | 18 | 64.2857 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5459 | 99.3019 | 99.7911 | 49.8616 | 6686 | 47 | 6688 | 14 | 9 | 64.2857 | |
| ltrigg-rtg1 | INDEL | I1_5 | HG002complexvar | homalt | 99.5102 | 99.1299 | 99.8933 | 45.8849 | 13330 | 117 | 13110 | 14 | 9 | 64.2857 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.3339 | 99.0472 | 99.6223 | 38.0132 | 7381 | 71 | 7385 | 28 | 18 | 64.2857 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.5589 | 96.3636 | 92.8205 | 77.9037 | 371 | 14 | 362 | 28 | 18 | 64.2857 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8311 | 99.7438 | 99.9184 | 52.5299 | 17133 | 44 | 17145 | 14 | 9 | 64.2857 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8014 | 99.7293 | 99.8736 | 52.3918 | 11054 | 30 | 11063 | 14 | 9 | 64.2857 | |
| rpoplin-dv42 | SNP | * | map_l250_m0_e0 | * | 97.4806 | 96.9555 | 98.0114 | 92.0139 | 2070 | 65 | 2070 | 42 | 27 | 64.2857 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 92.0134 | 85.8844 | 99.0844 | 88.5511 | 1515 | 249 | 1515 | 14 | 9 | 64.2857 | |
| rpoplin-dv42 | INDEL | * | map_l100_m2_e1 | homalt | 98.9071 | 98.9071 | 98.9071 | 83.4560 | 1267 | 14 | 1267 | 14 | 9 | 64.2857 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 87.6722 | 83.5938 | 92.1690 | 57.0360 | 1498 | 294 | 1483 | 126 | 81 | 64.2857 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.2037 | 89.1403 | 93.3649 | 89.3380 | 197 | 24 | 197 | 14 | 9 | 64.2857 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 12.5000 | 91.6230 | 0 | 0 | 2 | 14 | 9 | 64.2857 | |
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 92.3491 | 87.7265 | 97.4860 | 57.2867 | 4260 | 596 | 4343 | 112 | 72 | 64.2857 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m1_e0 | het | 94.2063 | 98.4127 | 90.3448 | 86.6236 | 124 | 2 | 131 | 14 | 9 | 64.2857 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e0 | het | 94.4089 | 98.4733 | 90.6667 | 87.1023 | 129 | 2 | 136 | 14 | 9 | 64.2857 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 90.0572 | 89.8904 | 90.2247 | 50.1569 | 38954 | 4381 | 59902 | 6490 | 4175 | 64.3297 | |
| ckim-isaac | INDEL | I16_PLUS | * | * | 74.7295 | 62.4588 | 93.0005 | 54.4140 | 3983 | 2394 | 3986 | 300 | 193 | 64.3333 | |
| ghariani-varprowl | INDEL | I1_5 | * | homalt | 94.4302 | 91.5834 | 97.4597 | 39.6857 | 55342 | 5086 | 55284 | 1441 | 928 | 64.3997 | |
| rpoplin-dv42 | SNP | * | map_l150_m2_e1 | * | 99.0777 | 98.8916 | 99.2644 | 75.0455 | 31853 | 357 | 31847 | 236 | 152 | 64.4068 | |
| rpoplin-dv42 | SNP | ti | map_l150_m1_e0 | het | 98.9713 | 98.7874 | 99.1558 | 74.5638 | 12220 | 150 | 12216 | 104 | 67 | 64.4231 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.9120 | 98.2491 | 99.5839 | 53.4969 | 24915 | 444 | 24890 | 104 | 67 | 64.4231 | |
| ckim-gatk | INDEL | * | * | * | 99.2271 | 99.1551 | 99.2992 | 60.7185 | 341631 | 2911 | 341492 | 2410 | 1553 | 64.4398 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.1711 | 98.8017 | 99.5433 | 59.8357 | 19624 | 238 | 19617 | 90 | 58 | 64.4444 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 91.8743 | 94.4038 | 89.4769 | 44.0923 | 13799 | 818 | 39955 | 4699 | 3029 | 64.4605 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 5.1744 | 2.8363 | 29.4574 | 72.6502 | 101 | 3460 | 114 | 273 | 176 | 64.4689 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 9.1482 | 5.4613 | 28.1579 | 72.1408 | 74 | 1281 | 107 | 273 | 176 | 64.4689 | |
| anovak-vg | INDEL | I1_5 | map_l125_m0_e0 | * | 57.2924 | 58.7097 | 55.9420 | 90.7507 | 182 | 128 | 193 | 152 | 98 | 64.4737 | |
| jpowers-varprowl | INDEL | * | map_l150_m2_e0 | het | 92.3836 | 93.0464 | 91.7301 | 91.9202 | 843 | 63 | 843 | 76 | 49 | 64.4737 | |
| jlack-gatk | INDEL | D6_15 | * | * | 96.4774 | 96.4127 | 96.5422 | 54.8116 | 25156 | 936 | 25156 | 901 | 581 | 64.4839 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 49.8505 | 34.5745 | 89.3103 | 71.9536 | 260 | 492 | 259 | 31 | 20 | 64.5161 | |
| gduggal-snapvard | INDEL | D6_15 | map_l150_m2_e0 | * | 72.9884 | 73.1707 | 72.8070 | 88.6680 | 60 | 22 | 83 | 31 | 20 | 64.5161 | |
| gduggal-snapvard | INDEL | D6_15 | map_l150_m2_e1 | * | 72.3984 | 71.7647 | 73.0435 | 88.8023 | 61 | 24 | 84 | 31 | 20 | 64.5161 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8478 | 99.8054 | 99.8902 | 58.2232 | 28205 | 55 | 28208 | 31 | 20 | 64.5161 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.6190 | 99.4381 | 99.8005 | 49.8273 | 14687 | 83 | 15511 | 31 | 20 | 64.5161 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 89.8651 | 88.3469 | 91.4365 | 80.2294 | 326 | 43 | 331 | 31 | 20 | 64.5161 | |
| bgallagher-sentieon | INDEL | I6_15 | * | het | 98.9304 | 98.7940 | 99.0672 | 58.9052 | 9912 | 121 | 9877 | 93 | 60 | 64.5161 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 87.2528 | 88.5714 | 85.9729 | 64.5833 | 31 | 4 | 190 | 31 | 20 | 64.5161 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 82.7487 | 71.4392 | 98.3125 | 49.4079 | 1916 | 766 | 1806 | 31 | 20 | 64.5161 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 80.2108 | 82.2072 | 78.3091 | 58.4509 | 1095 | 237 | 1130 | 313 | 202 | 64.5367 | |
| jli-custom | INDEL | I16_PLUS | * | * | 96.2725 | 93.9627 | 98.6987 | 64.2188 | 5992 | 385 | 5992 | 79 | 51 | 64.5570 | |
| jpowers-varprowl | INDEL | * | map_l150_m1_e0 | * | 92.4886 | 91.1061 | 93.9137 | 90.2023 | 1219 | 119 | 1219 | 79 | 51 | 64.5570 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 88.5630 | 82.2103 | 95.9796 | 32.1478 | 5661 | 1225 | 1886 | 79 | 51 | 64.5570 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.6157 | 98.5123 | 98.7194 | 55.0135 | 6092 | 92 | 6090 | 79 | 51 | 64.5570 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 11.1206 | 7.0388 | 26.4706 | 75.6646 | 58 | 766 | 63 | 175 | 113 | 64.5714 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 16.8844 | 12.6126 | 25.5319 | 75.5463 | 56 | 388 | 60 | 175 | 113 | 64.5714 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 96.8519 | 94.5071 | 99.3160 | 27.2218 | 6951 | 404 | 6970 | 48 | 31 | 64.5833 | |
| ciseli-custom | INDEL | * | map_l125_m2_e0 | * | 67.7061 | 62.3406 | 74.0821 | 90.8144 | 1369 | 827 | 1372 | 480 | 310 | 64.5833 | |
| anovak-vg | INDEL | I6_15 | HG002complexvar | het | 40.0214 | 28.2378 | 68.6825 | 52.4803 | 665 | 1690 | 954 | 435 | 281 | 64.5977 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 33.1255 | 25.5937 | 46.9388 | 67.3333 | 97 | 282 | 115 | 130 | 84 | 64.6154 | |