PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
65801-65850 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.4712 | 96.1968 | 98.7798 | 51.8157 | 5514 | 218 | 5505 | 68 | 43 | 63.2353 | |
| eyeh-varpipe | INDEL | * | map_l150_m0_e0 | * | 96.3994 | 96.4981 | 96.3009 | 96.8271 | 496 | 18 | 781 | 30 | 19 | 63.3333 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.5033 | 98.3901 | 98.6169 | 63.5523 | 2139 | 35 | 2139 | 30 | 19 | 63.3333 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.1797 | 95.6882 | 98.7185 | 59.2515 | 2308 | 104 | 2311 | 30 | 19 | 63.3333 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.6568 | 96.9051 | 98.4202 | 76.2358 | 1910 | 61 | 1869 | 30 | 19 | 63.3333 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.6568 | 96.9051 | 98.4202 | 76.2358 | 1910 | 61 | 1869 | 30 | 19 | 63.3333 | |
| hfeng-pmm3 | INDEL | D1_5 | HG002complexvar | * | 99.2121 | 98.5267 | 99.9072 | 56.6840 | 32233 | 482 | 32285 | 30 | 19 | 63.3333 | |
| gduggal-snapvard | INDEL | D6_15 | map_l150_m2_e0 | het | 79.0507 | 91.3043 | 69.6970 | 89.1089 | 42 | 4 | 69 | 30 | 19 | 63.3333 | |
| gduggal-snapvard | INDEL | D6_15 | map_l150_m2_e1 | het | 79.3149 | 91.4894 | 70.0000 | 89.2473 | 43 | 4 | 70 | 30 | 19 | 63.3333 | |
| ciseli-custom | INDEL | I1_5 | func_cds | * | 86.4865 | 88.8889 | 84.2105 | 28.0303 | 160 | 20 | 160 | 30 | 19 | 63.3333 | |
| egarrison-hhga | INDEL | I1_5 | HG002complexvar | homalt | 99.1848 | 99.1225 | 99.2472 | 49.0370 | 13330 | 118 | 13315 | 101 | 64 | 63.3663 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.1552 | 98.5347 | 99.7836 | 72.0617 | 32749 | 487 | 32742 | 71 | 45 | 63.3803 | |
| qzeng-custom | SNP | * | * | homalt | 99.6134 | 99.3243 | 99.9041 | 17.3884 | 1172188 | 7974 | 1162090 | 1115 | 707 | 63.4081 | |
| eyeh-varpipe | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 64.6259 | 92.9598 | 0 | 0 | 95 | 52 | 33 | 63.4615 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 84.8725 | 80.8690 | 89.2931 | 75.5803 | 4802 | 1136 | 2602 | 312 | 198 | 63.4615 | |
| jmaeng-gatk | INDEL | * | HG002complexvar | het | 99.5676 | 99.3876 | 99.7482 | 58.0104 | 45929 | 283 | 45560 | 115 | 73 | 63.4783 | |
| ghariani-varprowl | SNP | tv | map_l100_m2_e1 | homalt | 99.1004 | 98.8820 | 99.3197 | 66.7481 | 9198 | 104 | 9198 | 63 | 40 | 63.4921 | |
| jpowers-varprowl | SNP | tv | HG002complexvar | * | 99.3235 | 99.1623 | 99.4852 | 24.4097 | 244090 | 2062 | 244285 | 1264 | 803 | 63.5285 | |
| anovak-vg | INDEL | I1_5 | map_l150_m2_e1 | * | 59.8471 | 62.1469 | 57.7114 | 90.7116 | 330 | 201 | 348 | 255 | 162 | 63.5294 | |
| gduggal-snapplat | INDEL | D6_15 | HG002compoundhet | * | 47.6068 | 33.6951 | 81.0840 | 49.2004 | 3043 | 5988 | 2962 | 691 | 439 | 63.5311 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 94.6238 | 92.9702 | 96.3373 | 84.5241 | 2526 | 191 | 2525 | 96 | 61 | 63.5417 | |
| rpoplin-dv42 | SNP | ti | map_l150_m2_e1 | het | 98.9954 | 98.8167 | 99.1746 | 76.0502 | 12861 | 154 | 12857 | 107 | 68 | 63.5514 | |
| jmaeng-gatk | INDEL | I16_PLUS | * | * | 97.0081 | 96.0953 | 97.9383 | 71.0190 | 6128 | 249 | 6128 | 129 | 82 | 63.5659 | |
| jlack-gatk | SNP | * | * | homalt | 99.9692 | 99.9511 | 99.9872 | 17.3366 | 1179584 | 577 | 1179556 | 151 | 96 | 63.5762 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.4008 | 99.8073 | 97.0334 | 44.7618 | 6732 | 13 | 6738 | 206 | 131 | 63.5922 | |
| ciseli-custom | INDEL | * | HG002compoundhet | het | 30.5417 | 31.9071 | 29.2883 | 74.6335 | 1305 | 2785 | 2889 | 6975 | 4438 | 63.6272 | |
| cchapple-custom | INDEL | * | * | het | 99.2026 | 98.9188 | 99.4881 | 58.0034 | 192034 | 2099 | 238847 | 1229 | 782 | 63.6290 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 63.1476 | 62.9630 | 63.3333 | 96.0159 | 17 | 10 | 19 | 11 | 7 | 63.6364 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.5288 | 99.4462 | 99.6115 | 59.5139 | 19752 | 110 | 19745 | 77 | 49 | 63.6364 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 86.3781 | 85.6589 | 87.1094 | 66.0027 | 221 | 37 | 223 | 33 | 21 | 63.6364 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m1_e0 | * | 70.7071 | 66.0377 | 76.0870 | 91.4019 | 35 | 18 | 35 | 11 | 7 | 63.6364 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m2_e0 | * | 70.7071 | 66.0377 | 76.0870 | 92.4959 | 35 | 18 | 35 | 11 | 7 | 63.6364 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m2_e1 | * | 70.7071 | 66.0377 | 76.0870 | 92.6518 | 35 | 18 | 35 | 11 | 7 | 63.6364 | |
| ghariani-varprowl | INDEL | I1_5 | func_cds | * | 94.1828 | 94.4444 | 93.9227 | 43.4375 | 170 | 10 | 170 | 11 | 7 | 63.6364 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 70.2703 | 100.0000 | 54.1667 | 50.0000 | 13 | 0 | 13 | 11 | 7 | 63.6364 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 88.2353 | 93.6395 | 0 | 0 | 165 | 22 | 14 | 63.6364 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.7622 | 99.7519 | 99.7725 | 68.8442 | 4825 | 12 | 4825 | 11 | 7 | 63.6364 | |
| rpoplin-dv42 | SNP | tv | map_l250_m2_e1 | het | 97.8128 | 97.8626 | 97.7631 | 87.3293 | 1923 | 42 | 1923 | 44 | 28 | 63.6364 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 94.2193 | 94.2819 | 94.1567 | 58.3748 | 709 | 43 | 709 | 44 | 28 | 63.6364 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 87.2160 | 81.7010 | 93.5294 | 74.9816 | 317 | 71 | 318 | 22 | 14 | 63.6364 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.1160 | 95.4815 | 98.8074 | 51.9618 | 5473 | 259 | 5468 | 66 | 42 | 63.6364 | |
| ndellapenna-hhga | INDEL | I1_5 | segdup | * | 98.8658 | 98.7724 | 98.9593 | 94.1605 | 1046 | 13 | 1046 | 11 | 7 | 63.6364 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 59.4595 | 73.3333 | 50.0000 | 96.4630 | 11 | 4 | 11 | 11 | 7 | 63.6364 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4334 | 99.0346 | 99.8354 | 46.3028 | 6668 | 65 | 6670 | 11 | 7 | 63.6364 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m0_e0 | * | 67.1440 | 61.1650 | 74.4186 | 83.6190 | 63 | 40 | 64 | 22 | 14 | 63.6364 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.3619 | 97.0541 | 95.6795 | 75.5568 | 1219 | 37 | 1218 | 55 | 35 | 63.6364 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.1930 | 99.1930 | 99.1930 | 76.9218 | 1352 | 11 | 1352 | 11 | 7 | 63.6364 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.6838 | 99.6701 | 99.6976 | 61.7359 | 10875 | 36 | 10878 | 33 | 21 | 63.6364 | |
| gduggal-bwavard | INDEL | D6_15 | map_l150_m0_e0 | * | 71.6418 | 75.0000 | 68.5714 | 94.8605 | 24 | 8 | 24 | 11 | 7 | 63.6364 | |
| gduggal-bwavard | INDEL | D6_15 | map_l150_m0_e0 | het | 78.4314 | 100.0000 | 64.5161 | 94.8074 | 20 | 0 | 20 | 11 | 7 | 63.6364 | |