PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
65651-65700 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | * | func_cds | het | 88.4234 | 85.0467 | 92.0792 | 43.5754 | 182 | 32 | 186 | 16 | 10 | 62.5000 | |
| gduggal-snapfb | INDEL | C6_15 | * | * | 71.8894 | 85.7143 | 61.9048 | 96.2298 | 6 | 1 | 13 | 8 | 5 | 62.5000 | |
| gduggal-bwaplat | INDEL | I1_5 | segdup | het | 93.3578 | 88.8476 | 98.3505 | 97.1410 | 478 | 60 | 477 | 8 | 5 | 62.5000 | |
| gduggal-bwavard | INDEL | * | map_l100_m1_e0 | homalt | 95.9129 | 92.7465 | 99.3031 | 75.5380 | 1138 | 89 | 1140 | 8 | 5 | 62.5000 | |
| gduggal-bwavard | INDEL | * | map_l100_m2_e0 | homalt | 95.9415 | 92.7835 | 99.3220 | 77.0294 | 1170 | 91 | 1172 | 8 | 5 | 62.5000 | |
| gduggal-bwavard | INDEL | * | map_l100_m2_e1 | homalt | 95.8810 | 92.6620 | 99.3317 | 77.1434 | 1187 | 94 | 1189 | 8 | 5 | 62.5000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 83.1329 | 78.1250 | 88.8268 | 67.2461 | 225 | 63 | 318 | 40 | 25 | 62.5000 | |
| gduggal-bwafb | SNP | * | * | homalt | 99.9194 | 99.8626 | 99.9762 | 18.5273 | 1178541 | 1621 | 1178572 | 280 | 175 | 62.5000 | |
| gduggal-bwafb | SNP | * | map_l100_m0_e0 | homalt | 99.4296 | 99.0017 | 99.8611 | 65.4925 | 11504 | 116 | 11504 | 16 | 10 | 62.5000 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.0040 | 98.6760 | 99.3342 | 81.0100 | 2385 | 32 | 2387 | 16 | 10 | 62.5000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.6007 | 99.4924 | 99.7093 | 41.1337 | 2744 | 14 | 2744 | 8 | 5 | 62.5000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 81.3513 | 68.8197 | 99.4627 | 55.6845 | 1481 | 671 | 1481 | 8 | 5 | 62.5000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 86.6815 | 77.7114 | 97.9925 | 71.6067 | 781 | 224 | 781 | 16 | 10 | 62.5000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m0_e0 | * | 97.7109 | 97.7273 | 97.6945 | 90.0086 | 172 | 4 | 339 | 8 | 5 | 62.5000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e0 | * | 97.6695 | 97.3025 | 98.0392 | 88.0317 | 505 | 14 | 800 | 16 | 10 | 62.5000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e1 | * | 97.7120 | 97.3635 | 98.0630 | 88.1407 | 517 | 14 | 810 | 16 | 10 | 62.5000 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 76.9552 | 70.1754 | 85.1852 | 99.3372 | 40 | 17 | 46 | 8 | 5 | 62.5000 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 83.3333 | 83.3333 | 83.3333 | 99.3536 | 35 | 7 | 40 | 8 | 5 | 62.5000 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.9263 | 97.7011 | 98.1524 | 69.9306 | 425 | 10 | 425 | 8 | 5 | 62.5000 | |
| jlack-gatk | INDEL | I1_5 | map_siren | homalt | 99.3823 | 99.4224 | 99.3421 | 78.6217 | 1205 | 7 | 1208 | 8 | 5 | 62.5000 | |
| jlack-gatk | SNP | tv | map_l100_m0_e0 | homalt | 99.0571 | 98.3359 | 99.7889 | 62.7592 | 3782 | 64 | 3782 | 8 | 5 | 62.5000 | |
| jlack-gatk | SNP | tv | map_l125_m0_e0 | homalt | 98.7279 | 97.8388 | 99.6332 | 70.1233 | 2173 | 48 | 2173 | 8 | 5 | 62.5000 | |
| jli-custom | INDEL | * | map_l100_m0_e0 | homalt | 98.6275 | 98.8212 | 98.4344 | 83.3605 | 503 | 6 | 503 | 8 | 5 | 62.5000 | |
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.3601 | 96.8531 | 99.9148 | 65.6503 | 9387 | 305 | 9387 | 8 | 5 | 62.5000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.6772 | 97.5494 | 99.8314 | 64.0612 | 4737 | 119 | 4737 | 8 | 5 | 62.5000 | |
| jlack-gatk | INDEL | * | map_l150_m2_e1 | homalt | 98.4772 | 98.5772 | 98.3773 | 89.0274 | 485 | 7 | 485 | 8 | 5 | 62.5000 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.8880 | 99.8233 | 99.9528 | 71.8323 | 16945 | 30 | 16945 | 8 | 5 | 62.5000 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.8880 | 99.8233 | 99.9528 | 71.8323 | 16945 | 30 | 16945 | 8 | 5 | 62.5000 | |
| ghariani-varprowl | INDEL | D1_5 | func_cds | het | 91.3978 | 100.0000 | 84.1584 | 48.7310 | 85 | 0 | 85 | 16 | 10 | 62.5000 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 90.0772 | 83.7398 | 97.4522 | 74.9001 | 309 | 60 | 306 | 8 | 5 | 62.5000 | |
| gduggal-snapplat | INDEL | * | map_l100_m1_e0 | hetalt | 21.5440 | 12.9032 | 65.2174 | 98.3076 | 16 | 108 | 15 | 8 | 5 | 62.5000 | |
| gduggal-snapvard | INDEL | C1_5 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 57.8947 | 87.4172 | 0 | 0 | 11 | 8 | 5 | 62.5000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 3.5385 | 1.9267 | 21.6495 | 84.1374 | 41 | 2087 | 42 | 152 | 95 | 62.5000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 7.2121 | 4.3609 | 20.8333 | 84.0266 | 29 | 636 | 40 | 152 | 95 | 62.5000 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.2514 | 99.9113 | 98.6002 | 57.2710 | 1127 | 1 | 1127 | 16 | 10 | 62.5000 | |
| gduggal-snapvard | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 25.8158 | 15.0294 | 91.4439 | 71.5156 | 332 | 1877 | 342 | 32 | 20 | 62.5000 | |
| gduggal-snapfb | INDEL | I1_5 | HG002complexvar | hetalt | 73.7418 | 73.4647 | 74.0210 | 78.5933 | 1268 | 458 | 775 | 272 | 170 | 62.5000 | |
| gduggal-snapvard | SNP | tv | map_l100_m0_e0 | homalt | 97.9071 | 96.0998 | 99.7837 | 64.7675 | 3696 | 150 | 3690 | 8 | 5 | 62.5000 | |
| gduggal-snapvard | SNP | tv | map_l100_m1_e0 | homalt | 98.2646 | 96.7599 | 99.8168 | 61.4274 | 8750 | 293 | 8718 | 16 | 10 | 62.5000 | |
| ckim-dragen | INDEL | * | map_l125_m0_e0 | homalt | 97.3588 | 97.5352 | 97.1831 | 87.5874 | 277 | 7 | 276 | 8 | 5 | 62.5000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5453 | 99.6109 | 99.4798 | 78.1348 | 1536 | 6 | 1530 | 8 | 5 | 62.5000 | |
| ciseli-custom | INDEL | * | func_cds | homalt | 89.9834 | 87.6106 | 92.4883 | 28.5235 | 198 | 28 | 197 | 16 | 10 | 62.5000 | |
| ciseli-custom | INDEL | * | map_l100_m0_e0 | * | 68.0279 | 62.5720 | 74.5262 | 89.7426 | 978 | 585 | 983 | 336 | 210 | 62.5000 | |
| ciseli-custom | INDEL | * | map_l150_m0_e0 | homalt | 61.1885 | 50.6098 | 77.3585 | 93.7537 | 83 | 81 | 82 | 24 | 15 | 62.5000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.5100 | 96.3492 | 98.6992 | 65.8143 | 607 | 23 | 607 | 8 | 5 | 62.5000 | |
| ckim-gatk | INDEL | * | map_l100_m0_e0 | homalt | 98.7267 | 99.0177 | 98.4375 | 85.4504 | 504 | 5 | 504 | 8 | 5 | 62.5000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4812 | 99.4812 | 99.4812 | 78.2296 | 1534 | 8 | 1534 | 8 | 5 | 62.5000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.0579 | 96.6667 | 97.4522 | 75.4879 | 319 | 11 | 306 | 8 | 5 | 62.5000 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 77.5000 | 75.6098 | 79.4872 | 90.6475 | 31 | 10 | 31 | 8 | 5 | 62.5000 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 73.8636 | 71.4286 | 76.4706 | 89.6024 | 25 | 10 | 26 | 8 | 5 | 62.5000 | |