PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
65601-65650 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | I6_15 | * | * | 97.4037 | 95.4115 | 99.4808 | 44.5038 | 23684 | 1139 | 23374 | 122 | 76 | 62.2951 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 81.6457 | 73.4098 | 91.9631 | 60.0526 | 704 | 255 | 698 | 61 | 38 | 62.2951 | |
| ciseli-custom | INDEL | * | map_l150_m2_e1 | * | 65.3436 | 59.0688 | 73.1100 | 93.1469 | 850 | 589 | 851 | 313 | 195 | 62.3003 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 95.5288 | 96.1960 | 94.8708 | 69.9124 | 4653 | 184 | 4661 | 252 | 157 | 62.3016 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 83.1025 | 78.7956 | 87.9076 | 66.5360 | 2787 | 750 | 2777 | 382 | 238 | 62.3037 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.8570 | 98.7533 | 98.9610 | 74.4420 | 30100 | 380 | 29622 | 311 | 194 | 62.3794 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.8570 | 98.7533 | 98.9610 | 74.4420 | 30100 | 380 | 29622 | 311 | 194 | 62.3794 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 52.3244 | 38.4502 | 81.8636 | 44.8624 | 1047 | 1676 | 492 | 109 | 68 | 62.3853 | |
| egarrison-hhga | INDEL | I6_15 | * | het | 97.7387 | 97.1494 | 98.3352 | 52.6628 | 9747 | 286 | 9746 | 165 | 103 | 62.4242 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.4419 | 95.8245 | 95.0624 | 80.9574 | 10350 | 451 | 10358 | 538 | 336 | 62.4535 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 89.1469 | 90.2954 | 88.0272 | 87.4552 | 1284 | 138 | 1294 | 176 | 110 | 62.5000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.1272 | 97.5987 | 98.6615 | 84.6994 | 3536 | 87 | 3538 | 48 | 30 | 62.5000 | |
| ndellapenna-hhga | INDEL | * | map_l100_m0_e0 | homalt | 98.5280 | 98.6248 | 98.4314 | 82.7119 | 502 | 7 | 502 | 8 | 5 | 62.5000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | * | hetalt | 63.8503 | 47.1288 | 98.9624 | 49.3430 | 911 | 1022 | 763 | 8 | 5 | 62.5000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 63.7991 | 47.0741 | 98.9583 | 49.3404 | 909 | 1022 | 760 | 8 | 5 | 62.5000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 63.7991 | 47.0741 | 98.9583 | 49.3404 | 909 | 1022 | 760 | 8 | 5 | 62.5000 | |
| rpoplin-dv42 | SNP | tv | map_l150_m0_e0 | * | 98.0795 | 97.8917 | 98.2680 | 78.2094 | 4086 | 88 | 4085 | 72 | 45 | 62.5000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 79.5169 | 66.3764 | 99.1444 | 42.1411 | 991 | 502 | 927 | 8 | 5 | 62.5000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 77.0538 | 84.4720 | 70.8333 | 31.6726 | 136 | 25 | 136 | 56 | 35 | 62.5000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 70.0000 | 91.3043 | 56.7568 | 82.5472 | 21 | 2 | 21 | 16 | 10 | 62.5000 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 90.2276 | 87.3057 | 93.3518 | 89.1559 | 337 | 49 | 337 | 24 | 15 | 62.5000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.1521 | 97.1677 | 99.1567 | 66.2396 | 4700 | 137 | 4703 | 40 | 25 | 62.5000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 82.4371 | 78.7879 | 86.4407 | 86.8304 | 52 | 14 | 51 | 8 | 5 | 62.5000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_siren | het | 81.2500 | 79.5918 | 82.9787 | 86.6856 | 39 | 10 | 39 | 8 | 5 | 62.5000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.3613 | 98.9539 | 99.7720 | 65.8757 | 3500 | 37 | 3501 | 8 | 5 | 62.5000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.2934 | 98.0494 | 98.5385 | 48.6812 | 6585 | 131 | 8091 | 120 | 75 | 62.5000 | |
| raldana-dualsentieon | SNP | * | map_l150_m0_e0 | homalt | 99.5464 | 99.2908 | 99.8033 | 71.7833 | 4060 | 29 | 4060 | 8 | 5 | 62.5000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7177 | 99.6321 | 99.8035 | 42.5670 | 4062 | 15 | 4064 | 8 | 5 | 62.5000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 90.9511 | 85.8736 | 96.6667 | 77.4436 | 231 | 38 | 232 | 8 | 5 | 62.5000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e1 | het | 98.1972 | 97.4074 | 99.0000 | 84.3750 | 789 | 21 | 792 | 8 | 5 | 62.5000 | |
| egarrison-hhga | INDEL | I16_PLUS | HG002complexvar | hetalt | 89.9158 | 83.5821 | 97.2881 | 65.1300 | 280 | 55 | 287 | 8 | 5 | 62.5000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 86.1862 | 76.5690 | 98.5663 | 43.2350 | 549 | 168 | 550 | 8 | 5 | 62.5000 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 85.5172 | 82.6667 | 88.5714 | 44.4444 | 62 | 13 | 62 | 8 | 5 | 62.5000 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 69.3642 | 92.3077 | 55.5556 | 70.4918 | 12 | 1 | 10 | 8 | 5 | 62.5000 | |
| dgrover-gatk | INDEL | * | * | het | 99.5990 | 99.6559 | 99.5422 | 61.2168 | 193465 | 668 | 193091 | 888 | 555 | 62.5000 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.6411 | 95.0774 | 98.2571 | 84.2376 | 1352 | 70 | 1353 | 24 | 15 | 62.5000 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.4954 | 99.2083 | 99.7842 | 37.6168 | 7393 | 59 | 7397 | 16 | 10 | 62.5000 | |
| eyeh-varpipe | INDEL | * | map_l250_m1_e0 | * | 96.2226 | 96.0656 | 96.3801 | 98.1181 | 293 | 12 | 426 | 16 | 10 | 62.5000 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.2859 | 91.1304 | 99.8384 | 63.0944 | 4942 | 481 | 4944 | 8 | 5 | 62.5000 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.2859 | 91.1304 | 99.8384 | 63.0944 | 4942 | 481 | 4944 | 8 | 5 | 62.5000 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.6846 | 96.8924 | 98.4899 | 76.8920 | 2089 | 67 | 2087 | 32 | 20 | 62.5000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.9027 | 95.4955 | 96.3134 | 65.1685 | 212 | 10 | 209 | 8 | 5 | 62.5000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.7564 | 96.8254 | 98.7055 | 66.0626 | 610 | 20 | 610 | 8 | 5 | 62.5000 | |
| dgrover-gatk | SNP | tv | HG002compoundhet | * | 99.7478 | 99.7647 | 99.7310 | 49.0520 | 8902 | 21 | 8897 | 24 | 15 | 62.5000 | |
| dgrover-gatk | SNP | tv | map_l100_m1_e0 | homalt | 99.6730 | 99.4360 | 99.9111 | 59.6774 | 8992 | 51 | 8992 | 8 | 5 | 62.5000 | |
| dgrover-gatk | SNP | tv | map_l100_m2_e0 | homalt | 99.6791 | 99.4465 | 99.9128 | 62.0923 | 9163 | 51 | 9163 | 8 | 5 | 62.5000 | |
| dgrover-gatk | SNP | tv | map_l100_m2_e1 | homalt | 99.6821 | 99.4517 | 99.9136 | 62.0828 | 9251 | 51 | 9251 | 8 | 5 | 62.5000 | |
| dgrover-gatk | SNP | tv | map_l125_m1_e0 | homalt | 99.5463 | 99.2321 | 99.8626 | 64.6877 | 5815 | 45 | 5815 | 8 | 5 | 62.5000 | |
| dgrover-gatk | SNP | tv | map_l125_m2_e0 | homalt | 99.5582 | 99.2521 | 99.8662 | 67.1591 | 5972 | 45 | 5972 | 8 | 5 | 62.5000 | |
| dgrover-gatk | SNP | tv | map_l125_m2_e1 | homalt | 99.5624 | 99.2591 | 99.8675 | 67.1759 | 6029 | 45 | 6029 | 8 | 5 | 62.5000 | |