PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
65451-65500 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 86.0678 | 81.0458 | 91.7533 | 79.3558 | 1240 | 290 | 1235 | 111 | 68 | 61.2613 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 92.6865 | 93.7182 | 91.6773 | 55.0764 | 23766 | 1593 | 23694 | 2151 | 1318 | 61.2738 | |
| egarrison-hhga | INDEL | D6_15 | map_siren | het | 94.1776 | 98.5714 | 90.1587 | 84.4291 | 276 | 4 | 284 | 31 | 19 | 61.2903 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 93.6854 | 91.9137 | 95.5267 | 69.7908 | 682 | 60 | 662 | 31 | 19 | 61.2903 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 93.4645 | 92.7140 | 94.2272 | 74.8006 | 509 | 40 | 506 | 31 | 19 | 61.2903 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.8703 | 95.1801 | 98.6216 | 73.1527 | 1876 | 95 | 2218 | 31 | 19 | 61.2903 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 96.8703 | 95.1801 | 98.6216 | 73.1527 | 1876 | 95 | 2218 | 31 | 19 | 61.2903 | |
| rpoplin-dv42 | SNP | * | map_l250_m2_e1 | het | 98.1365 | 98.0433 | 98.2299 | 88.1941 | 5161 | 103 | 5161 | 93 | 57 | 61.2903 | |
| raldana-dualsentieon | INDEL | D1_5 | HG002complexvar | het | 98.9112 | 97.9918 | 99.8479 | 54.6492 | 20348 | 417 | 20351 | 31 | 19 | 61.2903 | |
| egarrison-hhga | INDEL | * | * | homalt | 98.9696 | 99.0301 | 98.9091 | 55.3233 | 123958 | 1214 | 123939 | 1367 | 838 | 61.3021 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 88.4632 | 80.3154 | 98.4508 | 79.5350 | 51748 | 12683 | 51729 | 814 | 499 | 61.3022 | |
| gduggal-bwaplat | INDEL | * | * | * | 92.6621 | 87.0843 | 99.0034 | 65.2816 | 300042 | 44500 | 299917 | 3019 | 1851 | 61.3117 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 94.6830 | 99.7395 | 90.1145 | 68.5511 | 3446 | 9 | 3464 | 380 | 233 | 61.3158 | |
| jpowers-varprowl | SNP | * | segdup | homalt | 99.4812 | 99.9441 | 99.0225 | 89.9716 | 10737 | 6 | 10738 | 106 | 65 | 61.3208 | |
| ckim-dragen | INDEL | D16_PLUS | * | * | 97.1268 | 97.5531 | 96.7043 | 72.5515 | 6618 | 166 | 6602 | 225 | 138 | 61.3333 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 95.8927 | 93.7179 | 98.1709 | 38.9030 | 11129 | 746 | 11110 | 207 | 127 | 61.3527 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.6778 | 99.6209 | 99.7347 | 74.4322 | 33110 | 126 | 33088 | 88 | 54 | 61.3636 | |
| anovak-vg | INDEL | D6_15 | map_l100_m1_e0 | * | 69.8276 | 62.7907 | 78.6408 | 85.3172 | 162 | 96 | 162 | 44 | 27 | 61.3636 | |
| anovak-vg | INDEL | D6_15 | map_l100_m2_e0 | * | 69.8453 | 62.5000 | 79.1469 | 85.8199 | 165 | 99 | 167 | 44 | 27 | 61.3636 | |
| anovak-vg | INDEL | D6_15 | map_l100_m2_e1 | * | 69.0673 | 61.0909 | 79.4393 | 85.8746 | 168 | 107 | 170 | 44 | 27 | 61.3636 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 86.5003 | 83.7811 | 89.4019 | 58.5292 | 842 | 163 | 852 | 101 | 62 | 61.3861 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 89.1252 | 99.3103 | 80.8349 | 77.3820 | 432 | 3 | 426 | 101 | 62 | 61.3861 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 90.2617 | 90.9209 | 89.6121 | 75.0082 | 1402 | 140 | 1363 | 158 | 97 | 61.3924 | |
| anovak-vg | INDEL | I16_PLUS | HG002compoundhet | homalt | 35.7724 | 100.0000 | 21.7822 | 38.4146 | 3 | 0 | 44 | 158 | 97 | 61.3924 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 81.2553 | 73.6695 | 90.5826 | 44.2627 | 8181 | 2924 | 2068 | 215 | 132 | 61.3953 | |
| astatham-gatk | INDEL | D16_PLUS | * | het | 97.7337 | 99.3036 | 96.2126 | 78.4600 | 3137 | 22 | 2896 | 114 | 70 | 61.4035 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 54.2142 | 52.8090 | 55.6962 | 76.4881 | 94 | 84 | 88 | 70 | 43 | 61.4286 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 93.7592 | 93.1507 | 94.3756 | 73.2357 | 1836 | 135 | 1829 | 109 | 67 | 61.4679 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 93.7592 | 93.1507 | 94.3756 | 73.2357 | 1836 | 135 | 1829 | 109 | 67 | 61.4679 | |
| ltrigg-rtg2 | INDEL | D6_15 | * | * | 98.6807 | 97.9036 | 99.4704 | 46.9068 | 25545 | 547 | 25354 | 135 | 83 | 61.4815 | |
| ltrigg-rtg1 | INDEL | * | HG002complexvar | * | 98.8636 | 98.1465 | 99.5912 | 55.0476 | 75511 | 1426 | 75278 | 309 | 190 | 61.4887 | |
| jpowers-varprowl | SNP | ti | HG002compoundhet | * | 92.4932 | 93.2258 | 91.7721 | 42.7151 | 16294 | 1184 | 16396 | 1470 | 904 | 61.4966 | |
| ckim-isaac | INDEL | D16_PLUS | * | * | 86.5111 | 80.7488 | 93.1589 | 55.2640 | 5478 | 1306 | 5447 | 400 | 246 | 61.5000 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 82.0644 | 81.9516 | 82.1775 | 73.4245 | 1117 | 246 | 1102 | 239 | 147 | 61.5063 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 68.3237 | 77.6667 | 60.9872 | 71.9758 | 2330 | 670 | 3583 | 2292 | 1410 | 61.5183 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.8162 | 99.9112 | 97.7450 | 61.5346 | 2250 | 2 | 2254 | 52 | 32 | 61.5385 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 89.7334 | 83.3333 | 97.1983 | 70.7071 | 455 | 91 | 451 | 13 | 8 | 61.5385 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 83.9960 | 76.5257 | 93.0825 | 45.8976 | 7110 | 2181 | 2449 | 182 | 112 | 61.5385 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 83.9960 | 76.5257 | 93.0825 | 45.8976 | 7110 | 2181 | 2449 | 182 | 112 | 61.5385 | |
| ckim-dragen | SNP | tv | HG002compoundhet | * | 99.7984 | 99.7422 | 99.8546 | 49.3913 | 8900 | 23 | 8925 | 13 | 8 | 61.5385 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 94.7383 | 91.7031 | 97.9814 | 80.1296 | 630 | 57 | 631 | 13 | 8 | 61.5385 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m2_e0 | * | 76.0546 | 62.4277 | 97.2917 | 93.6809 | 324 | 195 | 467 | 13 | 8 | 61.5385 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m2_e1 | * | 76.1376 | 62.5235 | 97.3306 | 93.7113 | 332 | 199 | 474 | 13 | 8 | 61.5385 | |
| ltrigg-rtg2 | INDEL | I1_5 | HG002complexvar | homalt | 99.5439 | 99.1894 | 99.9010 | 45.4107 | 13338 | 109 | 13119 | 13 | 8 | 61.5385 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 96.7427 | 95.4178 | 98.1050 | 71.1886 | 708 | 34 | 673 | 13 | 8 | 61.5385 | |
| rpoplin-dv42 | INDEL | * | map_l100_m1_e0 | homalt | 98.9405 | 98.9405 | 98.9405 | 82.3199 | 1214 | 13 | 1214 | 13 | 8 | 61.5385 | |
| rpoplin-dv42 | INDEL | * | map_l100_m2_e0 | homalt | 98.9290 | 98.8898 | 98.9683 | 83.3597 | 1247 | 14 | 1247 | 13 | 8 | 61.5385 | |
| rpoplin-dv42 | SNP | * | map_l250_m2_e0 | het | 98.1499 | 98.0554 | 98.2446 | 88.1117 | 5093 | 101 | 5093 | 91 | 56 | 61.5385 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 91.5094 | 95.0980 | 88.1818 | 60.7143 | 97 | 5 | 97 | 13 | 8 | 61.5385 | |
| gduggal-bwavard | INDEL | D6_15 | map_l125_m0_e0 | * | 76.2887 | 78.7234 | 74.0000 | 94.1725 | 37 | 10 | 37 | 13 | 8 | 61.5385 | |